Parental gene:

Lsm6, ENSMUSG00000031683

Aliases:Lsm6, 1500031N17Rik, 2410088K19Rik, AI747288
Description:LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1925901]
Organism:Mouse (Mus musculus)
Coordinates:8:78804864..78821140(-)


>ENSMUSG00000031683
ATGAGCCTGCGGAAGCAAACCCCTAGCGACTTCTTAAAGCAGATCATCGGACGGCCAGTTGTGGTGAAATTAAATTCTGG
CGTGGATTATCGAGGGGTCCTGGCCTGCCTGGATGGCTACATGAATATAGCCCTGGAACAGACAGAGGAGTATGTAAATG
GACAGCTGAAGAATAAGTACGGAGATGCGTTCATCCGAGGAAACAATGTGCTGTACATAAGTACACAGAAGAGGCGGATG
TGA

Library Parental gene expression (RPM)
SRP007412_brain 26 .73 RPM
SRP007412_cerebellum 42 .99 RPM
SRP007412_heart 16 .25 RPM
SRP007412_kidney 19 .58 RPM
SRP007412_liver 22 .07 RPM
SRP007412_testis 10 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002482 ortholog_one2one 4 retrogenes
retro_cjac_1173, retro_cjac_1278, retro_cjac_3176, retro_cjac_3248,
Dasypus novemcinctus ENSDNOG00000009322 ortholog_one2one 5 retrogenes
retro_dnov_1118, retro_dnov_176, retro_dnov_2092, retro_dnov_301, retro_dnov_664,
Microcebus murinus ENSMICG00000000571 ortholog_one2one 1 retrogene
retro_mmur_1563,
Macaca mulatta ENSMMUG00000005524 ortholog_one2one 2 retrogenes
retro_mmul_668, retro_mmul_991,
Mus musculus ENSMUSG00000020018 within_species_paralog 4 retrogenes
retro_mmus_1060, retro_mmus_1197, retro_mmus_2537, retro_mmus_3210,
Otolemur garnettii ENSOGAG00000026665 possible_ortholog 1 retrogene
retro_ogar_233,
Pongo abelii ENSPPYG00000015105 ortholog_one2one 1 retrogene
retro_pabe_1994,
Pan troglodytes ENSPTRG00000016488 ortholog_one2one 1 retrogene
retro_ptro_1545,
Tarsius syrichta ENSTSYG00000012759 ortholog_one2one 4 retrogenes
retro_tsyr_1332, retro_tsyr_1727, retro_tsyr_340, retro_tsyr_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_820 97.50 100.00
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2. retro_mmus_956 85.19 98.75
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Download FASTA sequences of all ENSMUSG00000031683 retrocopies