Parental gene: | Snrpf, ENSMUSG00000020018 |
| Aliases: | Snrpf, 2010013O18Rik, SMF, sm-F, snRNP-F |
| Description: | small nuclear ribonucleoprotein polypeptide F [Source:MGI Symbol;Acc:MGI:1917128] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 10:93583028..93589706(-) |
>ENSMUSG00000020018
ATGAGTCTACCCCTCAACCCCAAGCCCTTTCTCAATGGGCTGACAGGGAAGCCAGTGATGGTGAAACTTAAGTGGGGCAT
GGAGTACAAGGGCTACCTGGTCTCCGTGGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAGTACATAGATGGGG
CGCTGTCTGGACATCTGGGCGAAGTTCTAATAAGGTGTAATAATGTCCTCTACATCAGAGGCGTTGAAGAAGAAGAGGAA
GATGGGGAAATGAGAGAATAG
ATGAGTCTACCCCTCAACCCCAAGCCCTTTCTCAATGGGCTGACAGGGAAGCCAGTGATGGTGAAACTTAAGTGGGGCAT
GGAGTACAAGGGCTACCTGGTCTCCGTGGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAGTACATAGATGGGG
CGCTGTCTGGACATCTGGGCGAAGTTCTAATAAGGTGTAATAATGTCCTCTACATCAGAGGCGTTGAAGAAGAAGAGGAA
GATGGGGAAATGAGAGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 1 .00 RPM |
| SRP007412_cerebellum | 1 .30 RPM |
| SRP007412_heart | 1 .00 RPM |
| SRP007412_kidney | 0 .92 RPM |
| SRP007412_liver | 0 .52 RPM |
| SRP007412_testis | 3 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000002166 | possible_ortholog | 3 retrogenes | |
| Bos taurus | ENSBTAG00000016271 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019817 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000029966 | possible_ortholog | 4 retrogenes | |
| Homo sapiens | ENSG00000139343 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001127 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009302 | ortholog_one2one | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007176 | ortholog_one2one | 3 retrogenes | |
| Mus musculus | ENSMUSG00000031683 | within_species_paralog | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005835 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000004847 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000009036 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000005556 | ortholog_one2one | 4 retrogenes | |
| Sus scrofa | ENSSSCG00000000895 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1060 | 61.25 | 91.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1197 | 88.37 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_2537 | 97.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_3210 | 89.66 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000020018 retrocopies