Parental gene:

SNRPF, ENSPPYG00000004847

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162]
Organism:Orangutan (Pongo abelii)
Coordinates:12:97040809..97048313(+)


>ENSPPYG00000004847
ATGAGTTTACCCCTCAATCCCAAACCTTTCCTCAATGGACTAACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGAAT
GGAGTACAAGGGCTATCTGGTATCTGTAGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATACATAGATGGAG
CTTTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGAGGTGTGGAAGAAGAGGAAGAA
GATGGGGAAATGAGAGAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .75 RPM
SRP007412_cerebellum 9 .73 RPM
SRP007412_heart 7 .89 RPM
SRP007412_kidney 11 .34 RPM
SRP007412_liver 9 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002166 possible_ortholog 3 retrogenes
retro_amel_1239, retro_amel_42, retro_amel_883,
Bos taurus ENSBTAG00000016271 ortholog_one2one 1 retrogene
retro_btau_765,
Equus caballus ENSECAG00000019817 ortholog_one2one 1 retrogene
retro_ecab_154,
Felis catus ENSFCAG00000029966 possible_ortholog 4 retrogenes
retro_fcat_280, retro_fcat_66, retro_fcat_77, retro_fcat_861,
Homo sapiens ENSG00000139343 ortholog_one2one 3 retrogenes
retro_hsap_125, retro_hsap_2487, retro_hsap_2645,
Gorilla gorilla ENSGGOG00000001127 ortholog_one2one 2 retrogenes
retro_ggor_1549, retro_ggor_225,
Macaca mulatta ENSMMUG00000009302 ortholog_one2one 4 retrogenes
retro_mmul_1521, retro_mmul_361, retro_mmul_550, retro_mmul_893,
Mustela putorius furo ENSMPUG00000007176 ortholog_one2one 3 retrogenes
retro_mputfur_1309, retro_mputfur_377, retro_mputfur_941,
Mus musculus ENSMUSG00000020018 ortholog_one2one 4 retrogenes
retro_mmus_1060, retro_mmus_1197, retro_mmus_2537, retro_mmus_3210,
Nomascus leucogenys ENSNLEG00000005835 ortholog_one2one 3 retrogenes
retro_nleu_2259, retro_nleu_274, retro_nleu_651,
Pongo abelii ENSPPYG00000015105 within_species_paralog 1 retrogene
retro_pabe_1994,
Pteropus vampyrus ENSPVAG00000009036 ortholog_one2one 1 retrogene
retro_pvam_1170,
Rattus norvegicus ENSRNOG00000005556 ortholog_one2one 4 retrogenes
retro_rnor_1822, retro_rnor_1849, retro_rnor_2926, retro_rnor_444,
Sus scrofa ENSSSCG00000000895 ortholog_one2one 1 retrogene
retro_sscr_958,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_381 85.00 91.86
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2. retro_pabe_489 70.59 95.35
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Download FASTA sequences of all ENSPPYG00000004847 retrocopies