Parental gene:

UBE2C, ENSMODG00000013661

Aliases:None
Description:ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:449399526..449403240(+)


>ENSMODG00000013661
ATGGCCTCGCAGAACCGCGACCCGGCTGCTGCCAGCGCCGCCGCCGCCTCCCGTAAGGGAGCCGAGCCTGGGGCGGGCGC
GGCCCGAGGGTCCGTGGGCAAGAGATTACAACAAGAATTGATGACCCTAATGATGTCTGGAGATAAAGGAATTTCTGCCT
TCCCAGAGTCAGACAATCTCTTCAAATGGGTTGGGACCATCCATGGTGCAGCTGGGACAGTATATGAAGATCTGAGGTAC
AAGCTTTCTCTGGAGTTCCCCAGTGGCTATCCATATAATGCTCCCACAGTGAAATTTGTCACACCCTGCTACCATCCAAA
TGTGGACACCCAAGGCAATATCTGTTTGGACATCCTCAAAGACAAGTGGTCAGCTCTGTATGATGTCAGGACCATCCTAC
TCTCTATCCAGAGCCTGCTGGGAGAACCCAATATTGATAGCCCATTGAACACACATGCTGCTGAGCTTTGGACAAACCCT
ACAGCCTTTAAAAAGTACCTGCTGGAAACCTACATGAAGCAGGTGACCAGCCAAGAGCCCTGA

Library Parental gene expression (RPM)
SRP007412_brain 9 .30 RPM
SRP007412_cerebellum 5 .88 RPM
SRP007412_heart 16 .35 RPM
SRP007412_kidney 2 .63 RPM
SRP007412_liver 2 .52 RPM
SRP007412_testis 74 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012547 ortholog_one2one 5 retrogenes
retro_amel_1122, retro_amel_1353, retro_amel_157, retro_amel_1621, retro_amel_635,
Bos taurus ENSBTAG00000016746 ortholog_one2one 1 retrogene
retro_btau_249,
Canis familiaris ENSCAFG00000009745 ortholog_one2one 6 retrogenes
retro_cfam_1031, retro_cfam_1805, retro_cfam_1878, retro_cfam_2078, retro_cfam_290, retro_cfam_356,
Cavia porcellus ENSCPOG00000014102 ortholog_one2many 2 retrogenes
retro_cpor_1007, retro_cpor_211,
Dipodomys ordii ENSDORG00000011774 ortholog_one2one 4 retrogenes
retro_dord_157, retro_dord_386, retro_dord_421, retro_dord_84,
Equus caballus ENSECAG00000014619 ortholog_one2one 2 retrogenes
retro_ecab_297, retro_ecab_316,
Erinaceus europaeus ENSEEUG00000010643 ortholog_one2one 14 retrogenes
retro_eeur_113, retro_eeur_177, retro_eeur_249, retro_eeur_253, retro_eeur_266, retro_eeur_272, retro_eeur_294, retro_eeur_346, retro_eeur_375, retro_eeur_518, retro_eeur_592, retro_eeur_604, retro_eeur_641, retro_eeur_80,
Echinops telfairi ENSETEG00000012346 possible_ortholog 18 retrogenes
retro_etel_1212, retro_etel_1500, retro_etel_1560, retro_etel_157, retro_etel_1634, retro_etel_1729, retro_etel_1853, retro_etel_1856, retro_etel_2013, retro_etel_221, retro_etel_321, retro_etel_324, retro_etel_400, retro_etel_628, retro_etel_689, retro_etel_764, retro_etel_824, retro_etel_909,
Felis catus ENSFCAG00000001885 ortholog_one2one 4 retrogenes
retro_fcat_1440, retro_fcat_1530, retro_fcat_1667, retro_fcat_1734,
Homo sapiens ENSG00000175063 ortholog_one2one 3 retrogenes
retro_hsap_1474, retro_hsap_1922, retro_hsap_2935,
Gorilla gorilla ENSGGOG00000026061 ortholog_one2one 3 retrogenes
retro_ggor_1130, retro_ggor_1402, retro_ggor_2035,
Loxodonta africana ENSLAFG00000003164 ortholog_one2many 1 retrogene
retro_lafr_73,
Macropus eugenii ENSMEUG00000007177 ortholog_one2one 14 retrogenes
retro_meug_1021, retro_meug_1128, retro_meug_1203, retro_meug_1398, retro_meug_1435, retro_meug_145, retro_meug_1476, retro_meug_1504, retro_meug_1575, retro_meug_1773, retro_meug_1808, retro_meug_2034, retro_meug_334, retro_meug_645,
Microcebus murinus ENSMICG00000011218 ortholog_one2one 2 retrogenes
retro_mmur_332, retro_mmur_988,
Myotis lucifugus ENSMLUG00000006715 ortholog_one2one 4 retrogenes
retro_mluc_2164, retro_mluc_2220, retro_mluc_600, retro_mluc_636,
Macaca mulatta ENSMMUG00000021023 ortholog_one2many 4 retrogenes
retro_mmul_1345, retro_mmul_170, retro_mmul_1951, retro_mmul_777,
Mustela putorius furo ENSMPUG00000017619 ortholog_one2many 2 retrogenes
retro_mputfur_103, retro_mputfur_189,
Mus musculus ENSMUSG00000001403 ortholog_one2one 5 retrogenes
retro_mmus_1344, retro_mmus_1593, retro_mmus_1770, retro_mmus_2881, retro_mmus_3512,
Oryctolagus cuniculus ENSOCUG00000012176 ortholog_one2one 3 retrogenes
retro_ocun_1005, retro_ocun_1294, retro_ocun_348,
Otolemur garnettii ENSOGAG00000004989 ortholog_one2many 3 retrogenes
retro_ogar_2347, retro_ogar_249, retro_ogar_3067,
Ochotona princeps ENSOPRG00000014284 ortholog_one2one 4 retrogenes
retro_opri_1009, retro_opri_1055, retro_opri_222, retro_opri_50,
Pongo abelii ENSPPYG00000011071 ortholog_one2one 4 retrogenes
retro_pabe_1155, retro_pabe_1221, retro_pabe_1589, retro_pabe_2519,
Pan troglodytes ENSPTRG00000013564 ortholog_one2many 1 retrogene
retro_ptro_38,
Pteropus vampyrus ENSPVAG00000000369 ortholog_one2one 1 retrogene
retro_pvam_423,
Rattus norvegicus ENSRNOG00000015131 ortholog_one2one 5 retrogenes
retro_rnor_1390, retro_rnor_2131, retro_rnor_2470, retro_rnor_719, retro_rnor_864,
Sus scrofa ENSSSCG00000007423 ortholog_one2one 1 retrogene
retro_sscr_643,
Tursiops truncatus ENSTTRG00000015987 ortholog_one2one 1 retrogene
retro_ttru_1752,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_415 85.45 61.11
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2. retro_mdom_1549 60.50 66.11
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3. retro_mdom_1552 87.50 53.33
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4. retro_mdom_1732 68.00 82.22
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5. retro_mdom_1970 50.49 56.11
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6. retro_mdom_2020 66.94 66.67
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Download FASTA sequences of all ENSMODG00000013661 retrocopies