Parental gene: | UBE2C, ENSEEUG00000010643 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_7290:4845..8310(+) |
>ENSEEUG00000010643
ATGGCCTCGCAGAACCGCGACCCAGCCGCCTCCCGAGTCACCGCCGCCCGCAAAGCAGCCGAACCCAGCGGGGGCGCCGC
GCGAGGCCCCGTGGGCAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATGAGGACCTGAGGTATAAG
CTCTCCCTGGAGTTCCCCAGTGGCTACCCCTACAACGCACCCACTGTGAAGTTCCTCACGCCCTGCTACCACCCCAACGT
GGACACCCAGGGCAACATCTGCCTGGACATCTTGAAAGACAAGTGGTCTGCACTGTATGATGTCAGGACTATCCTGCTCT
CCATCCAGAGCCTTTTAGGAGAACCCAATATCGACAGCCCTTTGAACACACATGCTGCTGAGCTTTGGAAAAATCCCACA
GCCTTTAAGAAGTACCTGCAAGAAACCTACTCAAAGCAGGTCGCCAGTCAAGAACCCTAA
ATGGCCTCGCAGAACCGCGACCCAGCCGCCTCCCGAGTCACCGCCGCCCGCAAAGCAGCCGAACCCAGCGGGGGCGCCGC
GCGAGGCCCCGTGGGCAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATATGAGGACCTGAGGTATAAG
CTCTCCCTGGAGTTCCCCAGTGGCTACCCCTACAACGCACCCACTGTGAAGTTCCTCACGCCCTGCTACCACCCCAACGT
GGACACCCAGGGCAACATCTGCCTGGACATCTTGAAAGACAAGTGGTCTGCACTGTATGATGTCAGGACTATCCTGCTCT
CCATCCAGAGCCTTTTAGGAGAACCCAATATCGACAGCCCTTTGAACACACATGCTGCTGAGCTTTGGAAAAATCCCACA
GCCTTTAAGAAGTACCTGCAAGAAACCTACTCAAAGCAGGTCGCCAGTCAAGAACCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .16 RPM |
| SRP017611_kidney | 0 .19 RPM |
| SRP017611_brain | 0 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016746 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000009745 | ortholog_one2one | 6 retrogenes | |
| Equus caballus | ENSECAG00000014619 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000011886 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000001885 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000003164 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007177 | ortholog_one2one | 14 retrogenes | |
| Microcebus murinus | ENSMICG00000011218 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021023 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000013661 | ortholog_one2one | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017619 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000012176 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004989 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000013564 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000007423 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_80 | 68.69 | 54.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_113 | 66.36 | 58.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_177 | 88.68 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_249 | 66.04 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_eeur_253 | 78.70 | 59.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_eeur_266 | 86.92 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_eeur_272 | 75.00 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_eeur_294 | 88.68 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_eeur_346 | 73.58 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_eeur_375 | 89.81 | 59.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_eeur_518 | 85.85 | 59.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_eeur_592 | 85.32 | 59.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_eeur_604 | 84.44 | 50.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_eeur_641 | 82.52 | 57.54 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000010643 retrocopies