Parental gene:

UBE2C, ENSOCUG00000012176

Aliases:None
Description:ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018725:825556..828956(+)


>ENSOCUG00000012176
ATGGCCTCTCAAAATCGCGATCCAGCCGCCGCCAGCGTTGCCGCCGCCCGTAAAGGCGCCGAGCCGGTGGCCGGATCTGG
CCTTGGGGCTCCCGCGGGAGATAGGCTACAGCAGGAGTTAATGACGCTCATGATGTCTGGTGACAAAGGAATCTCTGCCT
TCCCCGAGTCAGACAACCTCTTCAAGTGGATAGGGACCATCCACGGGGCAGCCGGCACCGTATATGAAGACCTGAGGTAC
AAGCTCTCCCTGGAGTTCCCCAGTGGCTACCCTTACAACGCGCCCACGGTGAAGTTCCTCACGCCCTGCTACCACCCCAA
CGTGGACACGCAGGGGAACATCTGCCTGGACATCCTCAAGGACAAGTGGTCCGCCCTGTATGACGTCAGGACCATCCTGC
TGTCCATCCAGAGCCTGCTGGGAGAGCCCAACATCGATAGCCCTTTGAACACACATGCCGCCGAGCTCTGGAAAAACCCC
ACAGCTTTTAAGAAGTACCTGCAAGAAACCTACTCAAAGCAGGTCTCCAGCCAAGACCCCTGA

Library Parental gene expression (RPM)
SRP017611_liver 0 .23 RPM
SRP017611_kidney 0 .30 RPM
SRP017611_brain 0 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016746 ortholog_one2one 1 retrogene
retro_btau_249,
Canis familiaris ENSCAFG00000009745 ortholog_one2one 6 retrogenes
retro_cfam_1031, retro_cfam_1805, retro_cfam_1878, retro_cfam_2078, retro_cfam_290, retro_cfam_356,
Equus caballus ENSECAG00000014619 ortholog_one2one 2 retrogenes
retro_ecab_297, retro_ecab_316,
Erinaceus europaeus ENSEEUG00000010643 ortholog_one2one 14 retrogenes
retro_eeur_113, retro_eeur_177, retro_eeur_249, retro_eeur_253, retro_eeur_266, retro_eeur_272, retro_eeur_294, retro_eeur_346, retro_eeur_375, retro_eeur_518, retro_eeur_592, retro_eeur_604, retro_eeur_641, retro_eeur_80,
Felis catus ENSFCAG00000001885 ortholog_one2one 4 retrogenes
retro_fcat_1440, retro_fcat_1530, retro_fcat_1667, retro_fcat_1734,
Loxodonta africana ENSLAFG00000003164 possible_ortholog 1 retrogene
retro_lafr_73,
Macropus eugenii ENSMEUG00000007177 ortholog_one2one 14 retrogenes
retro_meug_1021, retro_meug_1128, retro_meug_1203, retro_meug_1398, retro_meug_1435, retro_meug_145, retro_meug_1476, retro_meug_1504, retro_meug_1575, retro_meug_1773, retro_meug_1808, retro_meug_2034, retro_meug_334, retro_meug_645,
Microcebus murinus ENSMICG00000011218 ortholog_one2one 2 retrogenes
retro_mmur_332, retro_mmur_988,
Macaca mulatta ENSMMUG00000021023 possible_ortholog 4 retrogenes
retro_mmul_1345, retro_mmul_170, retro_mmul_1951, retro_mmul_777,
Monodelphis domestica ENSMODG00000013661 ortholog_one2one 6 retrogenes
retro_mdom_1549, retro_mdom_1552, retro_mdom_1732, retro_mdom_1970, retro_mdom_2020, retro_mdom_415,
Mustela putorius furo ENSMPUG00000017619 possible_ortholog 2 retrogenes
retro_mputfur_103, retro_mputfur_189,
Oryctolagus cuniculus ENSOCUG00000010245 within_species_paralog 1 retrogene
retro_ocun_1189,
Otolemur garnettii ENSOGAG00000004989 possible_ortholog 3 retrogenes
retro_ogar_2347, retro_ogar_249, retro_ogar_3067,
Pan troglodytes ENSPTRG00000013564 possible_ortholog 1 retrogene
retro_ptro_38,
Sus scrofa ENSSSCG00000007423 ortholog_one2one 1 retrogene
retro_sscr_643,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_348 68.53 76.67
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2. retro_ocun_1005 66.91 73.33
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3. retro_ocun_1294 68.25 67.78
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Download FASTA sequences of all ENSOCUG00000012176 retrocopies