Parental gene: | ENSCJAG00000019848 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:130562225..130642197(+) |
>ENSCJAG00000019848
ATGGCCGATACTCGCGTGAGACAGATCAAGATCAAGACCGGCGTGGTGAAGCGGTTAGTGAAAGAAAAAGTGATGTATGA
AAAAGAAGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAGAGCTGAAGATGGTGAAAACTATGACATTAAAAAGCAGG
TAGAGATCCTACAAGAATCCCGGATGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCTGCATATTTGGATCTTCAACAG
ATATTAGTAAGTACAGACTTCTGTGTCTTATATTTAAAAACCTTTTTTTCAATCCAATACATGGAAAGCCAAAAGTTTAA
ATATTTAACACTGAGAATTAGTTGGTATTTCTTATTCACTTGCCCTTTATGCTACTATATTTTAAAATAA
ATGGCCGATACTCGCGTGAGACAGATCAAGATCAAGACCGGCGTGGTGAAGCGGTTAGTGAAAGAAAAAGTGATGTATGA
AAAAGAAGCAAAACAACAAGAAGAAAAGATTGAAAAAATGAGAGCTGAAGATGGTGAAAACTATGACATTAAAAAGCAGG
TAGAGATCCTACAAGAATCCCGGATGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCTGCATATTTGGATCTTCAACAG
ATATTAGTAAGTACAGACTTCTGTGTCTTATATTTAAAAACCTTTTTTTCAATCCAATACATGGAAAGCCAAAAGTTTAA
ATATTTAACACTGAGAATTAGTTGGTATTTCTTATTCACTTGCCCTTTATGCTACTATATTTTAAAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 7 .65 RPM |
| SRP051959_skeletal_muscle | 7 .34 RPM |
| SRP051959_lymph_node | 7 .15 RPM |
| SRP051959_lung | 8 .02 RPM |
| SRP051959_liver | 8 .12 RPM |
| SRP051959_kidney | 10 .32 RPM |
| SRP051959_heart | 9 .05 RPM |
| SRP051959_colon | 6 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000014223 | ortholog_many2many | 4 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000002112 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000012187 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000016572 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000171530 | possible_ortholog | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000005316 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011853 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000042043 | possible_ortholog | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010198 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000002460 | possible_ortholog | 4 retrogenes | |
| Procavia capensis | ENSPCAG00000011849 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015579 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000017013 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000048342 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000009943 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009840 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000006034 | possible_ortholog | 6 retrogenes | |
| Tarsius syrichta | ENSTSYG00000000514 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000001561 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_114 | 93.52 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2160 | 66.67 | 78.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2173 | 88.30 | 87.04 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2974 | 71.74 | 85.19 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019848 retrocopies