Parental gene:

POMP, ENSCJAG00000019473

Aliases:None
Description:proteasome maturation protein [Source:HGNC Symbol;Acc:20330]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:141639770..141659890(+)


>ENSCJAG00000019473
ATGAATGCCAGAGGACTTGGATCTGAGCTAAAGGACAGTATTCCAGTTACAGAACTTTCAGCAAGTGGACCTTTTGAAAG
TCATGATCTTCTTCGGAAGGGTTTTTCTTGTGTGAAAAATGAACTTTTGCCTAGTCATCCTCTCGAATTATCAGAAAAAA
ATTTCCAGCTCAACCAAGATAAAATGAATTTTTCCACTCTGAGAAACATTCAGGGTCTGTTTGCTCCACTAAAATTACAG
ATGGAATTCAAGGCAGTGCAGCAGGTTCAGCGTCTTCCATTTCTTCCAAGCTCAAATCTTTCACTGGATATTTTGAGGGG
TAATGATGAGACTATTGGATTTGAGGATATTCTCAATGATCCATCACAGAGCGAAGTCATGGGAGAGCCACACTTGATGG
TGGAATATAAACTGGGTTTACTATAA

Library Parental gene expression (RPM)
SRP051959_spleen 23 .26 RPM
SRP051959_skeletal_muscle 34 .39 RPM
SRP051959_lymph_node 17 .12 RPM
SRP051959_lung 18 .41 RPM
SRP051959_liver 25 .47 RPM
SRP051959_kidney 20 .41 RPM
SRP051959_heart 20 .59 RPM
SRP051959_colon 27 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000009671 ortholog_one2one 1 retrogene
retro_acar_56,
Ailuropoda melanoleuca ENSAMEG00000008961 ortholog_one2one 1 retrogene
retro_amel_965,
Bos taurus ENSBTAG00000014024 ortholog_one2one 3 retrogenes
retro_btau_1392, retro_btau_1563, retro_btau_755,
Choloepus hoffmanni ENSCHOG00000012807 ortholog_one2one 12 retrogenes
retro_chof_1473, retro_chof_1715, retro_chof_1767, retro_chof_2191, retro_chof_2256, retro_chof_2360, retro_chof_2479, retro_chof_442, retro_chof_658, retro_chof_738, retro_chof_739, retro_chof_924,
Cavia porcellus ENSCPOG00000001710 ortholog_one2one 3 retrogenes
retro_cpor_1465, retro_cpor_411, retro_cpor_630,
Dasypus novemcinctus ENSDNOG00000008848 ortholog_one2one 4 retrogenes
retro_dnov_1744, retro_dnov_1919, retro_dnov_2264, retro_dnov_2301,
Equus caballus ENSECAG00000011951 ortholog_one2one 1 retrogene
retro_ecab_329,
Echinops telfairi ENSETEG00000012448 ortholog_one2one 2 retrogenes
retro_etel_1043, retro_etel_718,
Felis catus ENSFCAG00000008235 ortholog_one2one 5 retrogenes
retro_fcat_2020, retro_fcat_266, retro_fcat_525, retro_fcat_742, retro_fcat_834,
Homo sapiens ENSG00000132963 ortholog_one2one 2 retrogenes
retro_hsap_2261, retro_hsap_4866,
Gorilla gorilla ENSGGOG00000015316 ortholog_one2one 2 retrogenes
retro_ggor_1684, retro_ggor_3038,
Loxodonta africana ENSLAFG00000003665 ortholog_one2one 1 retrogene
retro_lafr_1113,
Macropus eugenii ENSMEUG00000015416 ortholog_one2one 2 retrogenes
retro_meug_1570, retro_meug_1571,
Myotis lucifugus ENSMLUG00000010322 ortholog_one2many 1 retrogene
retro_mluc_53,
Macaca mulatta ENSMMUG00000000097 ortholog_one2one 2 retrogenes
retro_mmul_1027, retro_mmul_2603,
Mustela putorius furo ENSMPUG00000004690 ortholog_one2one 3 retrogenes
retro_mputfur_1023, retro_mputfur_1447, retro_mputfur_366,
Mus musculus ENSMUSG00000029649 ortholog_one2one 3 retrogenes
retro_mmus_1417, retro_mmus_2356, retro_mmus_3300,
Nomascus leucogenys ENSNLEG00000000572 ortholog_one2one 3 retrogenes
retro_nleu_1285, retro_nleu_1440, retro_nleu_1998,
Oryctolagus cuniculus ENSOCUG00000010137 ortholog_one2one 1 retrogene
retro_ocun_1377,
Otolemur garnettii ENSOGAG00000006044 ortholog_one2one 1 retrogene
retro_ogar_1672,
Ochotona princeps ENSOPRG00000016517 ortholog_one2one 2 retrogenes
retro_opri_459, retro_opri_833,
Procavia capensis ENSPCAG00000009680 ortholog_one2one 1 retrogene
retro_pcap_178,
Pongo abelii ENSPPYG00000005247 ortholog_one2one 1 retrogene
retro_pabe_3783,
Pan troglodytes ENSPTRG00000005745 ortholog_one2one 1 retrogene
retro_ptro_1601,
Pteropus vampyrus ENSPVAG00000000032 ortholog_one2one 3 retrogenes
retro_pvam_262, retro_pvam_551, retro_pvam_813,
Rattus norvegicus ENSRNOG00000048470 ortholog_one2many 2 retrogenes
retro_rnor_1289, retro_rnor_2020,
Rattus norvegicus ENSRNOG00000049229 ortholog_one2many 4 retrogenes
retro_rnor_1590, retro_rnor_1843, retro_rnor_2325, retro_rnor_625,
Sorex araneus ENSSARG00000001134 ortholog_one2one 5 retrogenes
retro_sara_184, retro_sara_371, retro_sara_423, retro_sara_57, retro_sara_64,
Ictidomys tridecemlineatus ENSSTOG00000013687 ortholog_one2one 2 retrogenes
retro_itri_1612, retro_itri_614,
Tupaia belangeri ENSTBEG00000012149 ortholog_one2one 13 retrogenes
retro_tbel_1015, retro_tbel_1278, retro_tbel_193, retro_tbel_2264, retro_tbel_3135, retro_tbel_3412, retro_tbel_3437, retro_tbel_346, retro_tbel_3491, retro_tbel_3861, retro_tbel_4172, retro_tbel_4342, retro_tbel_4708,
Tarsius syrichta ENSTSYG00000005121 ortholog_one2one 4 retrogenes
retro_tsyr_1002, retro_tsyr_1693, retro_tsyr_1887, retro_tsyr_1984,
Tursiops truncatus ENSTTRG00000012924 ortholog_one2one 4 retrogenes
retro_ttru_1166, retro_ttru_1465, retro_ttru_374, retro_ttru_577,
Vicugna pacos ENSVPAG00000001315 ortholog_one2one 2 retrogenes
retro_vpac_266, retro_vpac_284,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2947 94.92 83.69
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2. retro_cjac_3177 97.89 100.00
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3. retro_cjac_4191 66.67 51.77
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Download FASTA sequences of all ENSCJAG00000019473 retrocopies