Parental gene:

ENSCJAG00000006953

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:61886821..61892249(-)


>ENSCJAG00000006953
ATGGTGAAGTATTTCCTGGGCCAGAGCTTGCTCCGGAGTTCCTGGGACCAAGTGTTCGCCGCCTTCTGGCAGCGGTACCC
GAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTACACCGGGAGGTGACCCCTGACCAGAAACTGCTGTCCCGGC
GACTCCTGACCAAGACCAACAGGATGCCTCGCTGGGCCGAGCGACTGTTTCCTGCCAATGTTGCTCACTCGGTGTACATC
CTGGAGGACTCTATTGTGGACCCACAGAATCAGACCATGACCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGT
GGTGGAGGAACGATGTGTTTACTGTGTGAACTCTGACAACAGTGGCTGGACCGAAATCCGCCGTGAAGCCTGGGTCTCCT
CTAGCTTATTTGGTGTCTCCAGAGCTGTCCAGGAATTTGGTCTTGCCCGGTTCAAAAGCAACGTGACCAAGACTATGAAG
GGTTTTGAATATATCTTGGCGAAGCTGCAAGGTGAGGCCCCTTCCAAAACACTTGTTGAGACAGCCAAGGAAGCCAAGGA
GAAGGCAAAGGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTCGCCAGCAAGGCAGCCACCAAGTTCAGTCAGT
CCCAGCAGCAGGGTGTG

Library Parental gene expression (RPM)
SRP051959_spleen 12 .18 RPM
SRP051959_skeletal_muscle 4 .85 RPM
SRP051959_lymph_node 11 .94 RPM
SRP051959_lung 10 .28 RPM
SRP051959_liver 19 .49 RPM
SRP051959_kidney 18 .99 RPM
SRP051959_heart 6 .37 RPM
SRP051959_colon 19 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005009 ortholog_one2many 2 retrogenes
retro_btau_1727, retro_btau_962,
Canis familiaris ENSCAFG00000016443 ortholog_one2many 2 retrogenes
retro_cfam_2055, retro_cfam_349,
Choloepus hoffmanni ENSCHOG00000002251 possible_ortholog 1 retrogene
retro_chof_1025,
Cavia porcellus ENSCPOG00000025788 possible_ortholog 1 retrogene
retro_cpor_231,
Dasypus novemcinctus ENSDNOG00000017550 possible_ortholog 1 retrogene
retro_dnov_637,
Equus caballus ENSECAG00000023460 possible_ortholog 1 retrogene
retro_ecab_467,
Homo sapiens ENSG00000169230 ortholog_one2many 7 retrogenes
retro_hsap_1550, retro_hsap_2269, retro_hsap_249, retro_hsap_302, retro_hsap_3518, retro_hsap_3565, retro_hsap_579,
Gorilla gorilla ENSGGOG00000011762 ortholog_many2many 3 retrogenes
retro_ggor_2404, retro_ggor_302, retro_ggor_9,
Loxodonta africana ENSLAFG00000005459 possible_ortholog 1 retrogene
retro_lafr_242,
Macropus eugenii ENSMEUG00000001738 ortholog_one2many 12 retrogenes
retro_meug_1194, retro_meug_1541, retro_meug_1618, retro_meug_1725, retro_meug_1726, retro_meug_2054, retro_meug_274, retro_meug_666, retro_meug_681, retro_meug_854, retro_meug_895, retro_meug_918,
Myotis lucifugus ENSMLUG00000007008 ortholog_many2many 2 retrogenes
retro_mluc_239, retro_mluc_64,
Macaca mulatta ENSMMUG00000009046 ortholog_one2many 2 retrogenes
retro_mmul_1822, retro_mmul_2457,
Monodelphis domestica ENSMODG00000004804 ortholog_many2many 3 retrogenes
retro_mdom_1529, retro_mdom_221, retro_mdom_596,
Mustela putorius furo ENSMPUG00000012226 ortholog_one2many 1 retrogene
retro_mputfur_579,
Mus musculus ENSMUSG00000021486 possible_ortholog 7 retrogenes
retro_mmus_1316, retro_mmus_2079, retro_mmus_2236, retro_mmus_2394, retro_mmus_2672, retro_mmus_449, retro_mmus_866,
Nomascus leucogenys ENSNLEG00000012714 ortholog_one2many 5 retrogenes
retro_nleu_1382, retro_nleu_2395, retro_nleu_2400, retro_nleu_803, retro_nleu_857,
Otolemur garnettii ENSOGAG00000011455 possible_ortholog 4 retrogenes
retro_ogar_1352, retro_ogar_2025, retro_ogar_3006, retro_ogar_665,
Pongo abelii ENSPPYG00000016086 ortholog_one2many 7 retrogenes
retro_pabe_1283, retro_pabe_1696, retro_pabe_1699, retro_pabe_2907, retro_pabe_377, retro_pabe_409, retro_pabe_608,
Rattus norvegicus ENSRNOG00000016410 possible_ortholog 8 retrogenes
retro_rnor_1138, retro_rnor_1166, retro_rnor_1243, retro_rnor_1906, retro_rnor_2178, retro_rnor_2305, retro_rnor_637, retro_rnor_995,
Sus scrofa ENSSSCG00000014042 ortholog_one2many 4 retrogenes
retro_sscr_372, retro_sscr_794, retro_sscr_795, retro_sscr_811,
Tupaia belangeri ENSTBEG00000006445 ortholog_one2many 1 retrogene
retro_tbel_3855,
Tursiops truncatus ENSTTRG00000009571 ortholog_one2many 1 retrogene
retro_ttru_1886,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_835 90.67 68.49
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2. retro_cjac_1131 80.73 87.67
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3. retro_cjac_1689 63.03 72.60
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4. retro_cjac_2401 55.02 93.15
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5. retro_cjac_3359 98.16 99.09
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Download FASTA sequences of all ENSCJAG00000006953 retrocopies