RetrogeneDB - Retrocopy retro_ttru

						
>retro_ttru_1886
ATGGTGAAGTATTTCCTGGGCCAGAGTGTGCTCCGGAGTTCCTGGGACCAAGTGTTCGCTGCCTTCTGGCAGCGGTACCC

GAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTGCACTGGGAGGTGACCCCTGACCAGAAGCTCCTGTCCCGGC

GACTCCTGACCAAGACGAACAGGATGCCCCGCTGGGCTGAGCGACTATTTCCTGCCAATGTTGCTCACTCAGTGTACATC

CTGGAGGATTCTATTGTGGACCCACAGAACCAGACCATGACCACCTTCACCTGGAACATCAACCATGCCCGGCTGATGGT

GGTAGAGGAACGATGTGTTTACCGTGTGAACTCTGATAACAGCGGCTGGACCGAAATCTGCCCGGAAGCCTGGGTCTCCT

CTAGCTTGTTCGGCGTCTCCAGAGCTGTCCAGGAATTTGGTCTCGCCCGGTTCAAAAGCAACGTGACCAAGACTATGAAG

GGTTTTGAATACATCTTGGCCAAGCTGCAAGGTGAGGCCCCTCCCAAAACCCTTGTTGAAACAGCCGAGGAAGCCAAGGA

GAAGGCCAAGGAAATGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTTGCCAGCAAGGCAACCACCAAGAAGCAGCAGC

AGCAGCAGCAGTTTGTG

ORF - retro_ttru_1886 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	94.52 %
Parental protein coverage:	100. %
Number of stop codons detected:	0
Number of frameshifts detected	0

Retrocopy - Parental Gene Alignment:

									ParentalMVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERLF
		MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVH.EVTPDQKLLSRRLLTKTNRMPRWAERLF
RetrocopyMVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHWEVTPDQKLLSRRLLTKTNRMPRWAERLF
ParentalPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYRVNSDNSGWTEICREAWVSSSLFGVS
		PANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYRVNSDNSGWTEIC.EAWVSSSLFGVS
RetrocopyPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYRVNSDNSGWTEICPEAWVSSSLFGVS
ParentalRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPPKTLVETAKEAKEKAKETALAATEKAKDLASKAATK
		RAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPPKTLVETA.EAKEKAKE.ALAATEKAKDLASKA.TK
RetrocopyRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPPKTLVETAEEAKEKAKEMALAATEKAKDLASKATTK
ParentalKQQQQQQFV
		.......FV
RetrocopyXXXXXXXFV

							

							Legend:
							
								*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

						

RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1886 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1886 was not experimentally validated.

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 16 parental genes, and 61 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005009	2 retrocopies	retro_btau_1727, retro_btau_962,
Canis familiaris	ENSCAFG00000016443	2 retrocopies	retro_cfam_2055, retro_cfam_349,
Callithrix jacchus	ENSCJAG00000006953	5 retrocopies	retro_cjac_1131, retro_cjac_1689, retro_cjac_2401, retro_cjac_3359, retro_cjac_835,
Homo sapiens	ENSG00000169230	7 retrocopies	retro_hsap_1550, retro_hsap_2269, retro_hsap_249, retro_hsap_302, retro_hsap_3518, retro_hsap_3565, retro_hsap_579,
Gorilla gorilla	ENSGGOG00000011762	3 retrocopies	retro_ggor_2404, retro_ggor_302, retro_ggor_9,
Macropus eugenii	ENSMEUG00000001738	12 retrocopies	retro_meug_1194, retro_meug_1541, retro_meug_1618, retro_meug_1725, retro_meug_1726, retro_meug_2054, retro_meug_274, retro_meug_666, retro_meug_681, retro_meug_854, retro_meug_895, retro_meug_918,
Myotis lucifugus	ENSMLUG00000007008	2 retrocopies	retro_mluc_239, retro_mluc_64,
Macaca mulatta	ENSMMUG00000009046	2 retrocopies	retro_mmul_1822, retro_mmul_2457,
Monodelphis domestica	ENSMODG00000004804	3 retrocopies	retro_mdom_1529, retro_mdom_221, retro_mdom_596,
Mustela putorius furo	ENSMPUG00000012226	1 retrocopy	retro_mputfur_579,
Nomascus leucogenys	ENSNLEG00000012714	5 retrocopies	retro_nleu_1382, retro_nleu_2395, retro_nleu_2400, retro_nleu_803, retro_nleu_857,
Otolemur garnettii	ENSOGAG00000011455	4 retrocopies	retro_ogar_1352, retro_ogar_2025, retro_ogar_3006, retro_ogar_665,
Pongo abelii	ENSPPYG00000016086	7 retrocopies	retro_pabe_1283, retro_pabe_1696, retro_pabe_1699, retro_pabe_2907, retro_pabe_377, retro_pabe_409, retro_pabe_608,
Sus scrofa	ENSSSCG00000014042	4 retrocopies	retro_sscr_372, retro_sscr_794, retro_sscr_795, retro_sscr_811,
Tupaia belangeri	ENSTBEG00000006445	1 retrocopy	retro_tbel_3855,
Tursiops truncatus	ENSTTRG00000009571	1 retrocopy	retro_ttru_1886 ,

	RetrogeneDB ID:	retro_ttru_1886
Retrocopy location	Organism:	*Dolphin (Tursiops truncatus)*
	Coordinates:	scaffold_97274:48459..49116(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	PRELID1
	Ensembl ID:	ENSTTRG00000009571
	Aliases:	None
	Description:	PRELI domain containing 1 [Source:HGNC Symbol;Acc:30255]

Parental	MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHREVTPDQKLLSRRLLTKTNRMPRWAERLF
	MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVH.EVTPDQKLLSRRLLTKTNRMPRWAERLF
Retrocopy	MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDIVHWEVTPDQKLLSRRLLTKTNRMPRWAERLF

Parental	PANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYRVNSDNSGWTEICREAWVSSSLFGVS
	PANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYRVNSDNSGWTEIC.EAWVSSSLFGVS
Retrocopy	PANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYRVNSDNSGWTEICPEAWVSSSLFGVS

Parental	RAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPPKTLVETAKEAKEKAKETALAATEKAKDLASKAATK
	RAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPPKTLVETA.EAKEKAKE.ALAATEKAKDLASKA.TK
Retrocopy	RAVQEFGLARFKSNVTKTMKGFEYILAKLQGEAPPKTLVETAEEAKEKAKEMALAATEKAKDLASKATTK

Parental	KQQQQQQFV
	.......FV
Retrocopy	XXXXXXXFV

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_ttru_1886