Parental gene: | PRELID1, ENSSSCG00000014042 |
| Aliases: | None |
| Description: | PRELI domain containing 1 [Source:HGNC Symbol;Acc:30255] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 2:82222449..82226996(+) |
>ENSSSCG00000014042
ATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTTGCTGCCTTCTGGCAGCGGTACCC
GAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTGCACCGGGAAGTGACCCCTGACCAGAAGCTCCTGTCCCGGC
GACTCCTGACCAAGACAAACAGGATGCCCCGCTGGGCTGAGCGACTGTTTCCTGCCAATGTTGCTCACTCAGTGTACATC
CTGGAGGATTCTATCGTGGACCCACAGAACCAGACCATGACCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGT
GGTGGAGGAACGATGTGTTTACCGTGTGAACTCTGATAACAACAGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCT
CTAGCTTATTTGGTGTCTCCAGAGCTGTGCAGGAATTTGGTCTCGCCCGGTTCAAAAGCAACGTGACCAAGACTATGAAG
GGTTTTGAATACATCTTGGCCAAGCTGCAAGGTGAGGCCCCTCCCAAAACCCTTGTTGAAACAGCCAAGGAAGCCAAGGA
GAAGGCCAAAGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTTGCCAGCAAGGCAGCCACCAAGAAGCAGCAGC
AGCAGCAGCAGTTTGTGTAG
ATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTTGCTGCCTTCTGGCAGCGGTACCC
GAATCCCTATAGCAAACATGTCTTGACGGAAGACATAGTGCACCGGGAAGTGACCCCTGACCAGAAGCTCCTGTCCCGGC
GACTCCTGACCAAGACAAACAGGATGCCCCGCTGGGCTGAGCGACTGTTTCCTGCCAATGTTGCTCACTCAGTGTACATC
CTGGAGGATTCTATCGTGGACCCACAGAACCAGACCATGACCACCTTCACCTGGAACATCAACCACGCCCGGCTGATGGT
GGTGGAGGAACGATGTGTTTACCGTGTGAACTCTGATAACAACAGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCT
CTAGCTTATTTGGTGTCTCCAGAGCTGTGCAGGAATTTGGTCTCGCCCGGTTCAAAAGCAACGTGACCAAGACTATGAAG
GGTTTTGAATACATCTTGGCCAAGCTGCAAGGTGAGGCCCCTCCCAAAACCCTTGTTGAAACAGCCAAGGAAGCCAAGGA
GAAGGCCAAAGAGACGGCACTGGCAGCTACAGAGAAGGCCAAGGACCTTGCCAGCAAGGCAGCCACCAAGAAGCAGCAGC
AGCAGCAGCAGTTTGTGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 226 .97 RPM |
| SRP014902_testis | 110 .33 RPM |
| SRP018856_adipose | 125 .38 RPM |
| SRP018288_kidney | 155 .64 RPM |
| SRP018288_lung | 86 .45 RPM |
| SRP018288_liver | 163 .59 RPM |
| SRP018288_heart | 21 .98 RPM |
| SRP035408_liver | 180 .30 RPM |
| SRP035408_brain | 74 .16 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005009 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000016443 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000006953 | ortholog_one2many | 5 retrogenes | |
| Homo sapiens | ENSG00000169230 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011762 | ortholog_one2many | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000001738 | ortholog_one2one | 12 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007008 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000009046 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000004804 | ortholog_one2many | 3 retrogenes | |
| Mustela putorius furo | ENSMPUG00000012226 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012714 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000011455 | possible_ortholog | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000016086 | ortholog_one2one | 7 retrogenes | |
| Tupaia belangeri | ENSTBEG00000006445 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000009571 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_372 | 75.58 | 98.17 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_794 | 84.77 | 89.04 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_795 | 82.67 | 91.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_sscr_811 | 82.67 | 91.78 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000014042 retrocopies