Parental gene: | RRM2, ENSCJAG00000006533 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 14:98460562..98466541(-) |
>ENSCJAG00000006533
ATGCTCTCCGTCCGCGTCCCGCTCGCGCCCATCACGGACCCGCAGCAGCTGCAGCTCTCGCCGCTGAAGGGGCTCAGCCT
GGTCGACAAGGAGAACACGCCCCCGGCCCTGAACGGGACCCGGGTCCTGGCCAGCAAGACCGCGAGGAGGATCTTCCAGG
AGCCCGCGGAGCCGAAAACTCGAGCAGCCGCCCCCGGCGTGGAGGAGGAGCCGCTGCTGAGAGCAAACCCGCGCCGCTTT
GTCATCTTCCCCATCAAGTACCAGGACATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT
GGACCTGTCCAAGGACATTCGGCACTGGGAGTCCCTGAAGCCCGAGGAGAGATACTTCATATCCCACGTTCTGGCTTTCT
TCGCAGCGAGCGACGGCATAGTGAATGAAAACCTGGTGGAGCGATTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGT
TTCTATGGCTTCCAAATTGCCATGGAAAACATTCATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGATCC
CAGCGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGA
TTGGGGACAAAGAGGCTACCTATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT
GCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGG
TTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAATTC
TCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATG
AAGCAATACATTGAGTTTGTAGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATT
TGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAG
TGATGTCAAGTCCAACAGAGAATTCTTTTACCTTGGATGCTGACTTCTAG
ATGCTCTCCGTCCGCGTCCCGCTCGCGCCCATCACGGACCCGCAGCAGCTGCAGCTCTCGCCGCTGAAGGGGCTCAGCCT
GGTCGACAAGGAGAACACGCCCCCGGCCCTGAACGGGACCCGGGTCCTGGCCAGCAAGACCGCGAGGAGGATCTTCCAGG
AGCCCGCGGAGCCGAAAACTCGAGCAGCCGCCCCCGGCGTGGAGGAGGAGCCGCTGCTGAGAGCAAACCCGCGCCGCTTT
GTCATCTTCCCCATCAAGTACCAGGACATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT
GGACCTGTCCAAGGACATTCGGCACTGGGAGTCCCTGAAGCCCGAGGAGAGATACTTCATATCCCACGTTCTGGCTTTCT
TCGCAGCGAGCGACGGCATAGTGAATGAAAACCTGGTGGAGCGATTTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGT
TTCTATGGCTTCCAAATTGCCATGGAAAACATTCATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGATCC
CAGCGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGA
TTGGGGACAAAGAGGCTACCTATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTT
GCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGG
TTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAATTC
TCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATG
AAGCAATACATTGAGTTTGTAGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATT
TGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAG
TGATGTCAAGTCCAACAGAGAATTCTTTTACCTTGGATGCTGACTTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 6 .28 RPM |
| SRP051959_skeletal_muscle | 0 .00 RPM |
| SRP051959_lymph_node | 5 .91 RPM |
| SRP051959_lung | 1 .35 RPM |
| SRP051959_liver | 0 .82 RPM |
| SRP051959_kidney | 3 .48 RPM |
| SRP051959_heart | 0 .12 RPM |
| SRP051959_colon | 14 .22 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003409 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015923 | within_species_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000008652 | ortholog_one2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000009755 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015797 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000171848 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000000121 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000012789 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010596 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002057 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000014763 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000020649 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013733 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007075 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012656 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000023272 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000021742 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000017209 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2134 | 89.95 | 99.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2950 | 92.15 | 75.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3851 | 92.09 | 71.47 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006533 retrocopies