Parental gene:

ENSCPOG00000008652

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_125:3375796..3379898(-)


>ENSCPOG00000008652
ATGCTCTCCGTCCGTGCCCCGCTCGCCACGCTCGCAGACCAGCAGCAGCTGCAGCTGTCGCCGCTGAAGGGACTCAGCCT
GGCTGACAAGGAGAACACGCCTCCGTCCCTCAGCGGGACTCGCGTGCTGGCCAGTAAGACCGCGCGGCGGATCTTCCAGG
AGCCCACCGAGCCGCTCCAACAACAGAAGAGTAAGGGATTTGCGCCCAGCGTGGAGGAGGAACCACTGCTGAGAGAGAAC
CCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGAC
GGCAGAGGAGGTGGATCTTTCCAAAGACATTCAGCACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATCACACG
TTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCGGTTCAGCCAAGAAGTTCAAATCACA
GAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGAAAACATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTA
TATCAAAGATTCCAGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCCTGTGTGAAGAAGAAGGCGGACTGGG
CCTTGCGCTGGATTGGGGACAAAGAGGCCACTTATGGGGAACGCGTGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTT
TCTGGTTCTTTTGCGTCGATCTTCTGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAG
CAGAGATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAAGCACCTGGTGCATAGACCCTCAGAGCAGAGGGTGA
AGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAAC
TGCGAGCTCATGAAGCAGTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGGTTTTTCAAGT
GGAAAATCCATTTGACTTCATGGAGAATATTTCTCTGGAAGGGAAGACAAACTTCTTTGAGAAGAGGGTAGGCGAGTATC
AGAGGATGGGAGTTATGTCCAGCCCCACGGAGAATTCTTTTACATTGGATGCTGACTTTTAG

Library Parental gene expression (RPM)
SRP017611_liver 0 .83 RPM
SRP017611_kidney 1 .15 RPM
SRP017611_brain 1 .32 RPM
SRP040447_lung 4 .77 RPM
SRP040447_skeletal_muscle 0 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003409 ortholog_one2many 1 retrogene
retro_cfam_2113,
Callithrix jacchus ENSCJAG00000006533 ortholog_one2many 3 retrogenes
retro_cjac_2134, retro_cjac_2950, retro_cjac_3851,
Erinaceus europaeus ENSEEUG00000009755 ortholog_one2many 2 retrogenes
retro_eeur_421, retro_eeur_585,
Echinops telfairi ENSETEG00000015797 ortholog_one2many 2 retrogenes
retro_etel_640, retro_etel_691,
Homo sapiens ENSG00000171848 ortholog_one2many 1 retrogene
retro_hsap_4815,
Macropus eugenii ENSMEUG00000000121 ortholog_one2many 3 retrogenes
retro_meug_1450, retro_meug_199, retro_meug_277,
Microcebus murinus ENSMICG00000012789 ortholog_one2many 1 retrogene
retro_mmur_1384,
Myotis lucifugus ENSMLUG00000010596 ortholog_one2many 1 retrogene
retro_mluc_794,
Macaca mulatta ENSMMUG00000002057 ortholog_one2many 1 retrogene
retro_mmul_2568,
Monodelphis domestica ENSMODG00000014763 ortholog_many2many 1 retrogene
retro_mdom_775,
Mus musculus ENSMUSG00000020649 ortholog_one2many 2 retrogenes
retro_mmus_2472, retro_mmus_3073,
Nomascus leucogenys ENSNLEG00000013733 ortholog_one2many 2 retrogenes
retro_nleu_2190, retro_nleu_3040,
Otolemur garnettii ENSOGAG00000007075 ortholog_one2many 1 retrogene
retro_ogar_2665,
Pongo abelii ENSPPYG00000012656 ortholog_one2many 1 retrogene
retro_pabe_3743,
Rattus norvegicus ENSRNOG00000023272 ortholog_many2many 1 retrogene
retro_rnor_331,
Sus scrofa ENSSSCG00000021742 ortholog_many2many 1 retrogene
retro_sscr_901,
Tursiops truncatus ENSTTRG00000017209 ortholog_one2many 1 retrogene
retro_ttru_603,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_8 97.71 100.00
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Download FASTA sequences of all ENSCPOG00000008652 retrocopies