Parental gene:

ENSSSCG00000021742

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:GL892316.1:25773..31862(-)


>ENSSSCG00000021742
AAGCTCTCGGCCCCCAGCGTGGAGGACGAGCCGCTCCTGAGAGAAAACCCCCGGCGCTTTGTCATCTTTCCTATAGAATA
CCATGACATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAGGAGGTGGACCTCTCCAAGGACATTC
AGCACTGGGAGACCCTGAAGCCGGAGGAGAGATATTTTATTTCACATGTCCTGGCTTTCTTCGCAGCAAGTGATGGCATC
GTGAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACCGAAGCTCGTTGTTTCTATGGCTTCCAAATTGC
CATGGAAAACATACATTCTGAAATGTATAGCCTCCTCATCGACACTTACATCAAAGATTCCAAAGAAAGGGAATTCCTCT
TCAATGCCATCGAGACAATGCCTTGCGTAAAGAAGAAGGCAGACTGGGCCTTGCGCTGGATCGGGGACAAGGAGGCGACG
TACGGAGAACGGGTCGTAGCCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGGTCTTTTGCATCCATATTCTGGCTCAA
GAAACGAGGACTGATGCCTGGCCTGACCTTTTCCAACGAACTTATTAGCAGAGATGAGGGTTTACACTGCGACTTCGCCT
GCCTGATGTTCAAACACCTGTTACACAAGCCTTCGGAGCAGAGAGTGAAAGAAATCATCGTCAACGCCGTGCGGATAGAA
CAGGAGTTCCTCACGGAGGCCCTGCCCGTGAAGCTCATCGGGATGAACTGCACTTTAATGAAACAGTACATCGAGTTCGT
GGCAGACAGGCTCATGCTGGAGCTGGGCTTTGGCAAGGTCTTCAGAGTAGAGAATCCCTTTGACTTTATGGAGAATATTT
CCCTGGAGGGGAAGACAAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGCGTGATGTCAAGTCCGACCGAG
AATTCTTTTACCCTGGATGCCGACTTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 3 .98 RPM
SRP014902_testis 12 .87 RPM
SRP018856_adipose 1 .14 RPM
SRP018288_kidney 6 .11 RPM
SRP018288_lung 16 .19 RPM
SRP018288_liver 7 .36 RPM
SRP018288_heart 4 .37 RPM
SRP035408_liver 43 .36 RPM
SRP035408_brain 2 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003409 ortholog_one2many 1 retrogene
retro_cfam_2113,
Callithrix jacchus ENSCJAG00000006533 ortholog_one2many 3 retrogenes
retro_cjac_2134, retro_cjac_2950, retro_cjac_3851,
Cavia porcellus ENSCPOG00000008652 ortholog_many2many 1 retrogene
retro_cpor_8,
Erinaceus europaeus ENSEEUG00000009755 ortholog_one2many 2 retrogenes
retro_eeur_421, retro_eeur_585,
Echinops telfairi ENSETEG00000015797 ortholog_one2many 2 retrogenes
retro_etel_640, retro_etel_691,
Homo sapiens ENSG00000171848 ortholog_one2many 1 retrogene
retro_hsap_4815,
Macropus eugenii ENSMEUG00000000121 ortholog_one2many 3 retrogenes
retro_meug_1450, retro_meug_199, retro_meug_277,
Microcebus murinus ENSMICG00000012789 ortholog_one2many 1 retrogene
retro_mmur_1384,
Myotis lucifugus ENSMLUG00000010596 ortholog_one2many 1 retrogene
retro_mluc_794,
Macaca mulatta ENSMMUG00000002057 ortholog_one2many 1 retrogene
retro_mmul_2568,
Monodelphis domestica ENSMODG00000014763 ortholog_many2many 1 retrogene
retro_mdom_775,
Mus musculus ENSMUSG00000020649 ortholog_one2many 2 retrogenes
retro_mmus_2472, retro_mmus_3073,
Nomascus leucogenys ENSNLEG00000013733 ortholog_one2many 2 retrogenes
retro_nleu_2190, retro_nleu_3040,
Otolemur garnettii ENSOGAG00000007075 ortholog_one2many 1 retrogene
retro_ogar_2665,
Pongo abelii ENSPPYG00000012656 ortholog_one2many 1 retrogene
retro_pabe_3743,
Rattus norvegicus ENSRNOG00000023272 ortholog_many2many 1 retrogene
retro_rnor_331,
Tursiops truncatus ENSTTRG00000017209 ortholog_one2many 1 retrogene
retro_ttru_603,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_901 50.84 87.84
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Download FASTA sequences of all ENSSSCG00000021742 retrocopies