RetrogeneDB ID: retro_meug_1450

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold40893:7629..8220(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RRM2
• Ensembl ID: ENSMEUG00000000121
• Aliases: None
• Description: ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:10452]

Sequence

>retro_meug_1450
CATGTATTGACTTTCTTTGCAGCATGTGATGGCAGAGTAAATGCAAACTTGGTGCAGTGGTGAACCAACAAATACAGATA
ACCTAACCCTTCTGTTTCTATGGCTTCCAAATTACTATGGAAAACACATTCTGAAATGTAGTCTTCTTATTGACACTTAT
ATTAAAGACTCAAAAGAAATGGAATTTCTCTTCAATAGCACTGAAACTCTACCTTGTATTAAAAAGAAAGCTGGACTGTG
CTGGACTGGGGACAAAGAAACAACATATGGTGAATGTGTGGTAGTCTTTGCAGCTGTTGAAGGAATCTTTTCTGATTCTT
TTGCATTGATATTCTGGCTCAAGAAAGATTTAAAGCTTGGACTAGCTTTTTCCAATGAACTTCTTAGTAAAGATGAGAGT
TTATTATACTGTGGCTTCACCTGCTCAATGTTCAAAAAATTAGTAAGCAAACCTTCAGAGGAAAAAGCAAAATGAACAAT
CATCAATGCTGCTAGAATAGGACAGGATTTTCTAATTGTCACTTTGACTATGAAGTTGATCAGAATGAATTGCACTTTAA
TGAAGCAGTACGTTAATTTGTAGCAGACAGA

Alignment

ORF - retro_meug_1450 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.17 %
• Parental protein coverage: 61.77 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  HVLAFFAASDGIVNENLVER-FSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREF-LFNA
          HVL.FFAA.DG.VN.NLV.....Q..Q.T...CFYGFQI.MEN........L.....K..K...F.LFN.
Retrocopy HVLTFFAACDGRVNANLVQW<VNQQIQIT*PFCFYGFQITMENTF*NVV-FLLTLILKTQKKWNF<LFNS

Parental  IETLPCVKKKADWALRWIGDREATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE
          .ETLPC.KKKA...L.W.GD.E.TYGE.VV.FAAVEGI.FS.SFA.IFWLKK..L..GL.FSNEL.S.DE
Retrocopy TETLPCIKKKA--GLCWTGDKETTYGECVVVFAAVEGI-FSDSFALIFWLKK-DLKLGLAFSNELLSKDE

Parental  G-LHCDFACLMFKHLVHKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIE-FVADR
          ..L.C.F.C.MFK.LV.KPSEEK.K..IINA.RI.Q.FL...L..KLI.MNCTLMKQY...FVADR
Retrocopy SLLYCGFTCSMFKKLVSKPSEEKAK*TIINAARIGQDFLIVTLTMKLIRMNCTLMKQYVN<FVADR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1450 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1450 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003409	1 retrocopy	retro_cfam_2113,
Callithrix jacchus	ENSCJAG00000006533	3 retrocopies	retro_cjac_2134, retro_cjac_2950, retro_cjac_3851,
Cavia porcellus	ENSCPOG00000008652	1 retrocopy	retro_cpor_8,
Erinaceus europaeus	ENSEEUG00000009755	2 retrocopies	retro_eeur_421, retro_eeur_585,
Echinops telfairi	ENSETEG00000015797	2 retrocopies	retro_etel_640, retro_etel_691,
Homo sapiens	ENSG00000171848	1 retrocopy	retro_hsap_4815,
Macropus eugenii	ENSMEUG00000000121	3 retrocopies	retro_meug_1450 , retro_meug_199, retro_meug_277,
Microcebus murinus	ENSMICG00000012789	1 retrocopy	retro_mmur_1384,
Myotis lucifugus	ENSMLUG00000010596	1 retrocopy	retro_mluc_794,
Macaca mulatta	ENSMMUG00000002057	1 retrocopy	retro_mmul_2568,
Monodelphis domestica	ENSMODG00000014763	1 retrocopy	retro_mdom_775,
Mus musculus	ENSMUSG00000020649	2 retrocopies	retro_mmus_2472, retro_mmus_3073,
Nomascus leucogenys	ENSNLEG00000013733	2 retrocopies	retro_nleu_2190, retro_nleu_3040,
Otolemur garnettii	ENSOGAG00000007075	1 retrocopy	retro_ogar_2665,
Pongo abelii	ENSPPYG00000012656	1 retrocopy	retro_pabe_3743,
Rattus norvegicus	ENSRNOG00000023272	1 retrocopy	retro_rnor_331,
Sus scrofa	ENSSSCG00000021742	1 retrocopy	retro_sscr_901,
Tursiops truncatus	ENSTTRG00000017209	1 retrocopy	retro_ttru_603,