RetrogeneDB ID: | retro_fcat_666 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | B1:164376208..164376379(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSFCAG00000029899 | ||
| Aliases: | TMEM256, CE1H17orf61 | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_fcat_666
CCATGGGCTGCTTTCCACTGCTTGGGTGCCTTCTCTAGAGCCAGGGCCTTAGTCTTGGCCTTCTATGGGGTGCACAGTGC
CCAGTTTCCAGATGCCTCTGGGAAGGAGCTCTTAGACAAAGCCAACAAACACCACTTCTTACACAGCCTGGCCCTGCTGG
GGGTACCCCAT
ORF - retro_fcat_666 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.19 % |
| Parental protein coverage: | 50.44 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PGAAFRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKANKHHFFHSLALLGVPH |
| P.AAF..LGA.S.A.AL.LA.YG.H.AQFPDA.GKEL.DKANKHHF.HSLALLGVPH | |
| Retrocopy | PWAAFHCLGAFSRARALVLAFYGVHSAQFPDASGKELLDKANKHHFLHSLALLGVPH |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 3 .10 RPM |
| SRP017611_kidney | 0 .00 RPM | 14 .53 RPM |
| SRP017611_liver | 0 .00 RPM | 6 .47 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_666 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_666 was not experimentally validated.