Parental gene:

ENSSSCG00000025782

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:12:54951702..54952955(-)


>ENSSSCG00000025782
ATGGCGGGTCCGGGGGCTGTTTTCCGCCGTCTGGGTGCCTTGTCCGGAGCCGGGGCCTTAGGCTTGGCCTCCTACGGGGC
GCACGGAGCCCAGTTTCCGGATGCCTACGGCAAGGAGCTCTTTGACAAGACCAACAAACACCACTTCTTACACAGTCTGG
CCCTGTTAGGGGTGCCCCTGTGCAGAAAGCCCCTCTGGGCCGGGTTACTGCTAGCTTCTGGAACTACCTTATTCTGCACC
AGCTTTTACTACCAGGCTCTGAGCGGAGACCCCAGCATCCAGACTTTGGCCCCTGTGGGAGGGAGCCTGCTAATTTTGGG
CTGGCTTGCCTTGGCTCTTTGA

Library Parental gene expression (RPM)
SRP014902_placenta 19 .38 RPM
SRP014902_testis 23 .90 RPM
SRP018288_heart 8 .54 RPM
SRP018288_kidney 93 .68 RPM
SRP018288_liver 17 .91 RPM
SRP018288_lung 16 .90 RPM
SRP018856_adipose 59 .12 RPM
SRP035408_brain 6 .45 RPM
SRP035408_liver 9 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016683 ortholog_one2one 5 retrogenes
retro_amel_1190, retro_amel_1360, retro_amel_285, retro_amel_504, retro_amel_577,
Bos taurus ENSBTAG00000031752 ortholog_one2one 3 retrogenes
retro_btau_1301, retro_btau_1812, retro_btau_532,
Canis familiaris ENSCAFG00000023205 ortholog_one2one 2 retrogenes
retro_cfam_1146, retro_cfam_1965,
Callithrix jacchus ENSCJAG00000037786 ortholog_one2one 1 retrogene
retro_cjac_3985,
Cavia porcellus ENSCPOG00000004760 ortholog_one2one 1 retrogene
retro_cpor_564,
Equus caballus ENSECAG00000016499 ortholog_one2one 1 retrogene
retro_ecab_682,
Echinops telfairi ENSETEG00000016076 ortholog_one2one 3 retrogenes
retro_etel_1865, retro_etel_2014, retro_etel_693,
Felis catus ENSFCAG00000029899 ortholog_one2one 3 retrogenes
retro_fcat_417, retro_fcat_666, retro_fcat_933,
Homo sapiens ENSG00000205544 ortholog_one2many 2 retrogenes
retro_hsap_2212, retro_hsap_687,
Gorilla gorilla ENSGGOG00000000113 ortholog_one2one 2 retrogenes
retro_ggor_1745, retro_ggor_590,
Microcebus murinus ENSMICG00000012550 ortholog_one2one 1 retrogene
retro_mmur_841,
Macaca mulatta ENSMMUG00000015618 ortholog_one2one 2 retrogenes
retro_mmul_2408, retro_mmul_929,
Mus musculus ENSMUSG00000070394 ortholog_one2one 1 retrogene
retro_mmus_430,
Nomascus leucogenys ENSNLEG00000009435 ortholog_one2one 2 retrogenes
retro_nleu_2336, retro_nleu_776,
Otolemur garnettii ENSOGAG00000011378 ortholog_one2one 1 retrogene
retro_ogar_2039,
Ochotona princeps ENSOPRG00000014978 ortholog_one2one 2 retrogenes
retro_opri_117, retro_opri_1200,
Pongo abelii ENSPPYG00000007915 ortholog_one2one 3 retrogenes
retro_pabe_2084, retro_pabe_2179, retro_pabe_536,
Pan troglodytes ENSPTRG00000030987 ortholog_one2one 2 retrogenes
retro_ptro_1678, retro_ptro_492,
Pteropus vampyrus ENSPVAG00000005061 ortholog_one2one 1 retrogene
retro_pvam_357,
Rattus norvegicus ENSRNOG00000037540 ortholog_one2one 2 retrogenes
retro_rnor_1592, retro_rnor_2896,
Tursiops truncatus ENSTTRG00000009794 ortholog_one2one 2 retrogenes
retro_ttru_1495, retro_ttru_720,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_160 87.50 98.23
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2. retro_sscr_330 75.22 99.12
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Download FASTA sequences of all ENSSSCG00000025782 retrocopies