RetrogeneDB ID: | retro_cjac_321 | ||
Retrocopy location | Organism: | Marmoset (Callithrix jacchus) | |
| Coordinates: | 8:28317064..28317502(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSCJAG00000022143 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSCJAG00000014372 | ||
| Aliases: | None | ||
| Description: | None |
| Percent Identity: | 95.86 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
| Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
| MKFNPFVTSDRSKNRKRHF.APSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQ.VRGHYKGQQIGKV | |
| Retrocopy | MKFNPFVTSDRSKNRKRHFKAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQAVRGHYKGQQIGKV |
| Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETI |
| VQVYRKKYVIYIERVQRE.ANGTTVHVG.HPSK.VITRLKLDKDRK.ILERKAKSRQVGKEKGKYKEETI | |
| Retrocopy | VQVYRKKYVIYIERVQRERANGTTVHVGVHPSKAVITRLKLDKDRKQILERKAKSRQVGKEKGKYKEETI |
| Parental | EKMQE |
| EKMQE | |
| Retrocopy | EKMQE |
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP051959_colon | 0 .02 RPM | 46 .42 RPM |
| SRP051959_heart | 0 .05 RPM | 67 .25 RPM |
| SRP051959_kidney | 0 .04 RPM | 64 .67 RPM |
| SRP051959_liver | 0 .04 RPM | 88 .83 RPM |
| SRP051959_lung | 0 .02 RPM | 71 .76 RPM |
| SRP051959_lymph_node | 0 .09 RPM | 91 .64 RPM |
| SRP051959_skeletal_muscle | 0 .04 RPM | 83 .75 RPM |
| SRP051959_spleen | 0 .00 RPM | 97 .73 RPM |