Parental gene:

ENSSHAG00000017398

Aliases:None
Description:None
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL849569.1:2694928..2699150(-)


>ENSSHAG00000017398
ACACCTCAGAAGTCTTCTGAAAATGATGAAGTTCCTCCTATGCCCACCCCTCTGCCTCCTTTACATACTTTATCCCGAAA
TAATCTGCAGGTTTGGTGCCAGAGACTCAATATCAGTAAAAATGGTCGGAAGCACGTTCTATACAAGAGACTTTTGGAGC
ATGTGTCACCTTCTGAGCAAGTGAAAGACACTCCCAGTACAGAAGAAAAAGCCCAGTTGATAAAAATCAAAACAGAAACT
GCAACTGAAGAAGATTCTCCAGGGGAATTTAGTCAAATAGTGACTAAAACACCAGAGAGACTAACAAATAAGAAAAAGAA
AAGAGAGGCAACAAAAACCTCTCTTGTCCAAACTGCTAGCATGGCAGCATGGAGCAGACTCATGGCAACTATGAAGTCCA
AGGCTGTGTGGCCCACTCCTACATCTACTGAGCCTACTAGGTCCAAGCAATCAGCATTGCCAAGATGGTGTGTAGTTCAT
GGTGAAGCTTTTCCTAATGATGTGCCTGGTTCAGCTCCTTTGGAGTTCCATGCAGGACAGACCTGGGTACCTGAAAATGA
CATGTTGATCCCTCTGTTATTATTGCCTACCTGCTCTTTTCCACCCCCAGAAGTAGAAGACAATTGGCTGTGCCCCAAAT
GTGTTAACAGGTCTGAAATAATTGTGTTAAATGTAACTACA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020460 ortholog_one2many 2 retrogenes
retro_btau_435, retro_btau_529,
Canis familiaris ENSCAFG00000010335 ortholog_one2many 5 retrogenes
retro_cfam_1332, retro_cfam_1540, retro_cfam_1905, retro_cfam_1934, retro_cfam_996,
Callithrix jacchus ENSCJAG00000020168 ortholog_one2many 4 retrogenes
retro_cjac_1378, retro_cjac_1991, retro_cjac_3832, retro_cjac_944,
Callithrix jacchus ENSCJAG00000020171 ortholog_one2many 2 retrogenes
retro_cjac_1334, retro_cjac_1491,
Dasypus novemcinctus ENSDNOG00000010745 ortholog_one2many 6 retrogenes
retro_dnov_1248, retro_dnov_1626, retro_dnov_1714, retro_dnov_2462, retro_dnov_2583, retro_dnov_2656,
Erinaceus europaeus ENSEEUG00000008944 ortholog_one2many 4 retrogenes
retro_eeur_205, retro_eeur_415, retro_eeur_426, retro_eeur_616,
Echinops telfairi ENSETEG00000002722 ortholog_one2many 1 retrogene
retro_etel_312,
Echinops telfairi ENSETEG00000007985 ortholog_one2many 4 retrogenes
retro_etel_2051, retro_etel_2058, retro_etel_506, retro_etel_918,
Homo sapiens ENSG00000121570 ortholog_one2many 1 retrogene
retro_hsap_893,
Homo sapiens ENSG00000163530 ortholog_one2many 3 retrogenes
retro_hsap_1642, retro_hsap_2903, retro_hsap_357,
Gorilla gorilla ENSGGOG00000015121 ortholog_one2one 2 retrogenes
retro_ggor_1970, retro_ggor_723,
Loxodonta africana ENSLAFG00000016804 ortholog_one2many 1 retrogene
retro_lafr_456,
Microcebus murinus ENSMICG00000013744 ortholog_one2many 6 retrogenes
retro_mmur_1171, retro_mmur_156, retro_mmur_1634, retro_mmur_213, retro_mmur_598, retro_mmur_955,
Myotis lucifugus ENSMLUG00000007444 ortholog_one2many 1 retrogene
retro_mluc_1706,
Myotis lucifugus ENSMLUG00000016423 ortholog_one2many 1 retrogene
retro_mluc_973,
Macaca mulatta ENSMMUG00000016901 ortholog_one2many 1 retrogene
retro_mmul_1515,
Macaca mulatta ENSMMUG00000022112 ortholog_one2many 3 retrogenes
retro_mmul_1550, retro_mmul_342, retro_mmul_475,
Monodelphis domestica ENSMODG00000018083 ortholog_one2one 3 retrogenes
retro_mdom_1057, retro_mdom_1478, retro_mdom_999,
Mustela putorius furo ENSMPUG00000010206 ortholog_one2many 1 retrogene
retro_mputfur_800,
Mus musculus ENSMUSG00000058550 ortholog_one2many 3 retrogenes
retro_mmus_1907, retro_mmus_2085, retro_mmus_3656,
Mus musculus ENSMUSG00000072419 ortholog_one2many 7 retrogenes
retro_mmus_1303, retro_mmus_1832, retro_mmus_1847, retro_mmus_2391, retro_mmus_2935, retro_mmus_3699, retro_mmus_394,
Nomascus leucogenys ENSNLEG00000004020 ortholog_one2many 2 retrogenes
retro_nleu_1329, retro_nleu_633,
Nomascus leucogenys ENSNLEG00000004030 ortholog_one2many 3 retrogenes
retro_nleu_2888, retro_nleu_3018, retro_nleu_388,
Oryctolagus cuniculus ENSOCUG00000003175 ortholog_one2many 1 retrogene
retro_ocun_61,
Oryctolagus cuniculus ENSOCUG00000016435 ortholog_one2many 1 retrogene
retro_ocun_114,
Otolemur garnettii ENSOGAG00000031228 ortholog_one2many 7 retrogenes
retro_ogar_1678, retro_ogar_1722, retro_ogar_1953, retro_ogar_2404, retro_ogar_2567, retro_ogar_2900, retro_ogar_586,
Ochotona princeps ENSOPRG00000005059 ortholog_one2many 1 retrogene
retro_opri_433,
Pongo abelii ENSPPYG00000013565 ortholog_one2many 3 retrogenes
retro_pabe_2316, retro_pabe_2349, retro_pabe_770,
Pongo abelii ENSPPYG00000013566 ortholog_one2many 3 retrogenes
retro_pabe_1360, retro_pabe_2401, retro_pabe_346,
Pan troglodytes ENSPTRG00000015199 ortholog_one2many 3 retrogenes
retro_ptro_1113, retro_ptro_1962, retro_ptro_281,
Pan troglodytes ENSPTRG00000015200 ortholog_one2many 2 retrogenes
retro_ptro_1923, retro_ptro_616,
Pteropus vampyrus ENSPVAG00000010677 ortholog_one2many 1 retrogene
retro_pvam_1237,
Rattus norvegicus ENSRNOG00000025404 ortholog_one2many 4 retrogenes
retro_rnor_2750, retro_rnor_2996, retro_rnor_861, retro_rnor_862,
Tupaia belangeri ENSTBEG00000006212 ortholog_one2one 1 retrogene
retro_tbel_3864,
Tursiops truncatus ENSTTRG00000009500 ortholog_one2many 1 retrogene
retro_ttru_1524,
Tursiops truncatus ENSTTRG00000009508 ortholog_one2many 1 retrogene
retro_ttru_1772,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_542 64.83 62.11
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSHAG00000017398 retrocopies