Parental gene:

Dppa4, ENSRNOG00000025404

Aliases:None
Description:Developmental pluripotency-associated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:D3Z8Y2]
Organism:Rat (Rattus norvegicus)
Coordinates:11:58397939..58403636(-)


>ENSRNOG00000025404
GCAGAGGAGCCAAGGGAAGAAGTGGAATGCCAGATGTCTAGCCAACCGAGCACGTCTTCTGCAAAGACTAAAGCAACGGG
GAAGAAACAAAGAAAGTCAGAGAAAGATGACGGTTGTAAACCAGAGGAGAAAAGTGCACAAGATCCTGAGACTCCAGGGC
ACGCTCGTAGGAAGGTACCTGTTCCTCCTTTTCCACAGCATCTGCCCCCCGTGAACCTGATTCACCGAGACGTTTTGCGG
GCCTGGTGCCAGGAGATGAAGCTGAGCAGCAAAGGCCAGAAATTAGATGCTTATAAACGACTCCTTGCAAGGGCTTTCCC
AGATCAAATGCCCGAGTTGAAGAATGTTCCTGACTCAGCCAAAGAGGCCAGGTTGAAGATGCCTCGGAAAAAAATGAAGA
CGGAACCTGGGGAAGAGTCTCAGGTGACAGTTCCCCTGGAGATCGTCACTGTACCAGAGGAGCAGATACCTGCTCTCGTT
GATCCTCCTGTGCTCTATGAGGAAGTCAGCACCACGGTGGTAACTACATCTGCCTCAGAGGCAGTGTTGGCATCTTGGGC
CAGAATAGCAGCCAATGCTAAGAAGTTGGAGGCAGTGCCTTCCAATGCAACATCGGAGACCTATGGGGAAATGTGGTGTG
TGGTGCATGGGACAAGCCTTCCCGCAACCTCAAGTGGTTGGGTTCGACTACAGTTCCATGCTGGACAAGCCTGGGTACCC
GATAAGAAAGGGAAAGCGATTGCCCTCTTCCTGCTTCCGGCCTGCACATTTCCGCCCCCACACCTGGAGGATAACATGCT
GTGCCCCAAGTGTGTCCATAAGAACAAGATCTTAACTAAGAGCCTTGAAGGATAA

Library Parental gene expression (RPM)
SRP017611_brain 0 .00 RPM
SRP017611_kidney 0 .21 RPM
SRP017611_liver 0 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010335 ortholog_many2many 5 retrogenes
retro_cfam_1332, retro_cfam_1540, retro_cfam_1905, retro_cfam_1934, retro_cfam_996,
Callithrix jacchus ENSCJAG00000020171 ortholog_many2many 2 retrogenes
retro_cjac_1334, retro_cjac_1491,
Echinops telfairi ENSETEG00000002722 ortholog_one2many 1 retrogene
retro_etel_312,
Homo sapiens ENSG00000121570 ortholog_one2many 1 retrogene
retro_hsap_893,
Gorilla gorilla ENSGGOG00000015121 ortholog_one2many 2 retrogenes
retro_ggor_1970, retro_ggor_723,
Loxodonta africana ENSLAFG00000016804 ortholog_one2many 1 retrogene
retro_lafr_456,
Myotis lucifugus ENSMLUG00000016423 ortholog_one2many 1 retrogene
retro_mluc_973,
Macaca mulatta ENSMMUG00000016901 ortholog_many2many 1 retrogene
retro_mmul_1515,
Monodelphis domestica ENSMODG00000018083 ortholog_one2many 3 retrogenes
retro_mdom_1057, retro_mdom_1478, retro_mdom_999,
Mustela putorius furo ENSMPUG00000010206 ortholog_one2many 1 retrogene
retro_mputfur_800,
Mus musculus ENSMUSG00000058550 ortholog_many2many 3 retrogenes
retro_mmus_1907, retro_mmus_2085, retro_mmus_3656,
Nomascus leucogenys ENSNLEG00000004030 ortholog_one2many 3 retrogenes
retro_nleu_2888, retro_nleu_3018, retro_nleu_388,
Oryctolagus cuniculus ENSOCUG00000016435 ortholog_many2many 1 retrogene
retro_ocun_114,
Pongo abelii ENSPPYG00000013565 ortholog_one2many 3 retrogenes
retro_pabe_2316, retro_pabe_2349, retro_pabe_770,
Pan troglodytes ENSPTRG00000015200 ortholog_one2many 2 retrogenes
retro_ptro_1923, retro_ptro_616,
Pteropus vampyrus ENSPVAG00000010677 ortholog_one2many 1 retrogene
retro_pvam_1237,
Sarcophilus harrisii ENSSHAG00000017398 ortholog_one2many 1 retrogene
retro_shar_542,
Tursiops truncatus ENSTTRG00000009508 ortholog_one2many 1 retrogene
retro_ttru_1772,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_861 98.59 100.00
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2. retro_rnor_862 98.59 100.00
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3. retro_rnor_2750 57.52 90.85
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4. retro_rnor_2996 75.16 53.52
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Download FASTA sequences of all ENSRNOG00000025404 retrocopies