Parental gene:

Lsm5, ENSRNOG00000042126

Aliases:None
Description:U6 snRNA-associated Sm-like protein LSm5 [Source:RefSeq peptide;Acc:NP_001100759]
Organism:Rat (Rattus norvegicus)
Coordinates:4:151668264..151671481(-)


>ENSRNOG00000042126
ATGGCGGCTAACGCGACCACGAACCCGTCTCAACTCCTGCCACTAGAGCTTGTGGACAAGTGTATAGGATCAAGAATTCA
CATTGTGATGAAGAGTGATAAAGAAATCGTGGGTACACTTCTAGGATTTGATGACTTTGTCAATATGGTGTTGGAAGATG
TCACAGAGTTTGAAATTACACCAGAAGGAAGAAGAATTACAAAATTAGATCAAATTCTACTAAATGGAAATAATATAACA
ATGCTGGTTCCTGGAGGAGAAGGGCCTGAAGTATGA

Library Parental gene expression (RPM)
SRP017611_brain 4 .82 RPM
SRP017611_kidney 6 .28 RPM
SRP017611_liver 2 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006700 ortholog_one2one 1 retrogene
retro_amel_453,
Bos taurus ENSBTAG00000002332 ortholog_one2one 3 retrogenes
retro_btau_1012, retro_btau_1123, retro_btau_1313,
Choloepus hoffmanni ENSCHOG00000005335 possible_ortholog 1 retrogene
retro_chof_1042,
Callithrix jacchus ENSCJAG00000009185 ortholog_one2many 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Cavia porcellus ENSCPOG00000010421 ortholog_one2one 1 retrogene
retro_cpor_607,
Dasypus novemcinctus ENSDNOG00000008121 possible_ortholog 1 retrogene
retro_dnov_1836,
Equus caballus ENSECAG00000018445 ortholog_one2one 1 retrogene
retro_ecab_809,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Homo sapiens ENSG00000106355 possible_ortholog 2 retrogenes
retro_hsap_3703, retro_hsap_4216,
Gorilla gorilla ENSGGOG00000010325 possible_ortholog 2 retrogenes
retro_ggor_2504, retro_ggor_2824,
Loxodonta africana ENSLAFG00000029579 ortholog_one2one 3 retrogenes
retro_lafr_1000, retro_lafr_368, retro_lafr_922,
Microcebus murinus ENSMICG00000005353 possible_ortholog 3 retrogenes
retro_mmur_1345, retro_mmur_69, retro_mmur_950,
Myotis lucifugus ENSMLUG00000017028 possible_ortholog 1 retrogene
retro_mluc_2439,
Mus musculus ENSMUSG00000091625 ortholog_one2one 4 retrogenes
retro_mmus_1568, retro_mmus_423, retro_mmus_826, retro_mmus_837,
Nomascus leucogenys ENSNLEG00000015268 ortholog_one2one 1 retrogene
retro_nleu_179,
Oryctolagus cuniculus ENSOCUG00000029043 possible_ortholog 5 retrogenes
retro_ocun_1284, retro_ocun_1452, retro_ocun_1513, retro_ocun_1556, retro_ocun_903,
Otolemur garnettii ENSOGAG00000013892 ortholog_one2one 3 retrogenes
retro_ogar_2727, retro_ogar_3062, retro_ogar_881,
Ochotona princeps ENSOPRG00000002443 possible_ortholog 3 retrogenes
retro_opri_26, retro_opri_562, retro_opri_701,
Pongo abelii ENSPPYG00000017661 ortholog_one2one 1 retrogene
retro_pabe_3449,
Pan troglodytes ENSPTRG00000019057 ortholog_one2one 1 retrogene
retro_ptro_2862,
Pteropus vampyrus ENSPVAG00000009786 ortholog_one2one 1 retrogene
retro_pvam_1410,
Sus scrofa ENSSSCG00000026064 possible_ortholog 1 retrogene
retro_sscr_385,
Ictidomys tridecemlineatus ENSSTOG00000012662 possible_ortholog 4 retrogenes
retro_itri_1199, retro_itri_188, retro_itri_222, retro_itri_415,
Tupaia belangeri ENSTBEG00000004876 ortholog_one2one 11 retrogenes
retro_tbel_1043, retro_tbel_1107, retro_tbel_1217, retro_tbel_1323, retro_tbel_1549, retro_tbel_1865, retro_tbel_2203, retro_tbel_2908, retro_tbel_2956, retro_tbel_3330, retro_tbel_4335,
Tarsius syrichta ENSTSYG00000006449 possible_ortholog 9 retrogenes
retro_tsyr_1022, retro_tsyr_1080, retro_tsyr_1579, retro_tsyr_181, retro_tsyr_1837, retro_tsyr_1863, retro_tsyr_1963, retro_tsyr_577, retro_tsyr_96,
Tursiops truncatus ENSTTRG00000004237 ortholog_one2one 3 retrogenes
retro_ttru_1521, retro_ttru_1585, retro_ttru_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_567 88.04 100.00
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2. retro_rnor_694 55.17 92.31
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3. retro_rnor_1171 93.41 100.00
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Download FASTA sequences of all ENSRNOG00000042126 retrocopies