Parental gene:

LSM5, ENSBTAG00000002332

Aliases:None
Description:U6 snRNA-associated Sm-like protein LSm5 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJH0]
Organism:Cow (Bos taurus)
Coordinates:4:64411818..64415413(+)


>ENSBTAG00000002332
ATGGCGGCTAACGCTACCACTAACCCGTCGCAGCTGCTTCCTCTAGAGCTTGTGGACAAGTGTATAGGGTCAAGAATTCA
CATTGTGATGAAGAGTGATAAGGAGATTGTTGGCACACTTCTGGGATTTGATGACTTTGTCAATATGGTATTGGAAGATG
TCACTGAATTTGAAATCACACCAGAAGGAAGAAGAATTACTAAATTAGATCAAATTTTGCTAAATGGAAATAATATAACA
ATGCTGGTTCCTGGAGGAGAAGGACCTGAAGTATGA

Library Parental gene expression (RPM)
ERP005899_liver 13 .70 RPM
ERP005899_muscle 6 .28 RPM
SRP017611_brain 6 .49 RPM
SRP017611_kidney 8 .59 RPM
SRP017611_liver 3 .32 RPM
SRP030211_testis 10 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009185 possible_ortholog 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Loxodonta africana ENSLAFG00000029579 ortholog_one2one 3 retrogenes
retro_lafr_1000, retro_lafr_368, retro_lafr_922,
Mus musculus ENSMUSG00000091625 ortholog_one2one 4 retrogenes
retro_mmus_1568, retro_mmus_423, retro_mmus_826, retro_mmus_837,
Nomascus leucogenys ENSNLEG00000015268 ortholog_one2one 1 retrogene
retro_nleu_179,
Otolemur garnettii ENSOGAG00000013892 ortholog_one2one 3 retrogenes
retro_ogar_2727, retro_ogar_3062, retro_ogar_881,
Pongo abelii ENSPPYG00000017661 ortholog_one2one 1 retrogene
retro_pabe_3449,
Pteropus vampyrus ENSPVAG00000009786 ortholog_one2one 1 retrogene
retro_pvam_1410,
Rattus norvegicus ENSRNOG00000042126 ortholog_one2one 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Tupaia belangeri ENSTBEG00000004876 ortholog_one2one 11 retrogenes
retro_tbel_1043, retro_tbel_1107, retro_tbel_1217, retro_tbel_1323, retro_tbel_1549, retro_tbel_1865, retro_tbel_2203, retro_tbel_2908, retro_tbel_2956, retro_tbel_3330, retro_tbel_4335,
Tursiops truncatus ENSTTRG00000004237 ortholog_one2one 3 retrogenes
retro_ttru_1521, retro_ttru_1585, retro_ttru_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1012 77.01 94.51
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_btau_1123 81.32 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_btau_1313 84.62 85.71
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSBTAG00000002332 retrocopies