Parental gene:

LSM5, ENSTBEG00000004876

Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_1139:15057..18694(-)


>ENSTBEG00000004876
ATGGCGGCTAACGCTACTACCAACCCGTCGCAGCTGCTGCCGTTAGAGCTTGTGGACAAATGTATAGGATCAAGAATTCA
CATTGTGATGAAAAGTGATAAGGAAATTGTTGGTACACTTCTAGGATTTGATGACTTTGTCAATATGGTACTGGAAGATG
TTACTGAATTTGAAATCACACCAGAAGGAAGAAGGATTACTAAATTAGATCAGATTTTGCTAAATGGAAATAATATAACA
ATGCTGGTTCCTGGAGGAGAAGGACCTGAAGTATGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006700 ortholog_one2one 1 retrogene
retro_amel_453,
Bos taurus ENSBTAG00000002332 ortholog_one2one 3 retrogenes
retro_btau_1012, retro_btau_1123, retro_btau_1313,
Callithrix jacchus ENSCJAG00000009185 ortholog_one2many 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Cavia porcellus ENSCPOG00000010421 ortholog_one2one 1 retrogene
retro_cpor_607,
Equus caballus ENSECAG00000018445 ortholog_one2one 1 retrogene
retro_ecab_809,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Loxodonta africana ENSLAFG00000029579 ortholog_one2one 3 retrogenes
retro_lafr_1000, retro_lafr_368, retro_lafr_922,
Mus musculus ENSMUSG00000091625 ortholog_one2one 4 retrogenes
retro_mmus_1568, retro_mmus_423, retro_mmus_826, retro_mmus_837,
Nomascus leucogenys ENSNLEG00000015268 ortholog_one2one 1 retrogene
retro_nleu_179,
Otolemur garnettii ENSOGAG00000013892 ortholog_one2one 3 retrogenes
retro_ogar_2727, retro_ogar_3062, retro_ogar_881,
Pongo abelii ENSPPYG00000017661 ortholog_one2one 1 retrogene
retro_pabe_3449,
Pan troglodytes ENSPTRG00000019057 ortholog_one2one 1 retrogene
retro_ptro_2862,
Pteropus vampyrus ENSPVAG00000009786 ortholog_one2one 1 retrogene
retro_pvam_1410,
Rattus norvegicus ENSRNOG00000042126 ortholog_one2one 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,
Tursiops truncatus ENSTTRG00000004237 ortholog_one2one 3 retrogenes
retro_ttru_1521, retro_ttru_1585, retro_ttru_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_1043 81.82 72.53
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2. retro_tbel_1107 82.02 96.70
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3. retro_tbel_1217 75.86 63.74
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4. retro_tbel_1323 90.11 100.00
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5. retro_tbel_1549 74.19 100.00
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6. retro_tbel_1865 80.33 65.93
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7. retro_tbel_2203 96.05 83.52
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8. retro_tbel_2908 85.53 83.52
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9. retro_tbel_2956 70.97 100.00
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10. retro_tbel_3330 86.05 94.51
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11. retro_tbel_4335 92.42 72.53
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Download FASTA sequences of all ENSTBEG00000004876 retrocopies