Parental gene:

LSM5, ENSSSCG00000026064

Aliases:None
Description:LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]
Organism:Pig (Sus scrofa)
Coordinates:18:44736381..44739855(-)


>ENSSSCG00000026064
ATGGCGGCTAACGCTACGACTAACCCGTCGCAGCTGCTACCTCTAGAGCTTGTAGACAAGTGTATAGGATCAAGAATTCA
CATTGTGATGAAGAGTGATAAAGAGATTGTTGGCACGCTTCTCGGATTTGATGACTTTGTCAATATGGTACTGGAAGATG
TCACTGAATTTGAAATCACACCAGAAGGAAGAAGAATTACTAAGTTAGATCAAATTTTGCTAAATGGAAATAATATAACA
ATGCTGGTTCCTGGAGGAGAAGGACCTGAAGTATGA

Library Parental gene expression (RPM)
SRP014902_placenta 1 .06 RPM
SRP014902_testis 3 .82 RPM
SRP018288_heart 7 .70 RPM
SRP018288_kidney 19 .01 RPM
SRP018288_liver 11 .03 RPM
SRP018288_lung 3 .67 RPM
SRP018856_adipose 3 .01 RPM
SRP035408_brain 24 .36 RPM
SRP035408_liver 23 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009185 possible_ortholog 3 retrogenes
retro_cjac_1883, retro_cjac_2760, retro_cjac_3068,
Echinops telfairi ENSETEG00000018068 possible_ortholog 8 retrogenes
retro_etel_1305, retro_etel_1502, retro_etel_1907, retro_etel_198, retro_etel_2054, retro_etel_2193, retro_etel_454, retro_etel_964,
Homo sapiens ENSG00000106355 ortholog_one2one 2 retrogenes
retro_hsap_3703, retro_hsap_4216,
Gorilla gorilla ENSGGOG00000010325 ortholog_one2one 2 retrogenes
retro_ggor_2504, retro_ggor_2824,
Microcebus murinus ENSMICG00000005353 ortholog_one2one 3 retrogenes
retro_mmur_1345, retro_mmur_69, retro_mmur_950,
Myotis lucifugus ENSMLUG00000017028 ortholog_one2one 1 retrogene
retro_mluc_2439,
Oryctolagus cuniculus ENSOCUG00000029043 ortholog_one2one 5 retrogenes
retro_ocun_1284, retro_ocun_1452, retro_ocun_1513, retro_ocun_1556, retro_ocun_903,
Ochotona princeps ENSOPRG00000002443 ortholog_one2one 3 retrogenes
retro_opri_26, retro_opri_562, retro_opri_701,
Pongo abelii ENSPPYG00000017661 possible_ortholog 1 retrogene
retro_pabe_3449,
Rattus norvegicus ENSRNOG00000042126 possible_ortholog 3 retrogenes
retro_rnor_1171, retro_rnor_567, retro_rnor_694,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_385 88.41 75.82
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000026064 retrocopies