Parental gene:

Eif4b, ENSRNOG00000010103

Aliases:None
Description:eukaryotic translation initiation factor 4B [Source:RefSeq peptide;Acc:NP_001008325]
Organism:Rat (Rattus norvegicus)
Coordinates:7:141476182..141497938(+)


>ENSRNOG00000010103
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACCATCTCCCTAACAGACTTTCTAGCTGAGGATGGGGGAAC
TGGTGGAGGAAGCACCTATGTCCCCAAACCAGTCAGCTGGGCTGATGAAACAGACGATCTGGAAGGAGATGTGTCAACAA
CTTGGCATAGTAACGATGACGATGTGTACAGGGCACCTCCTATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATTGATCGGAGCCGTCTTCCCAAGTCACCACCCTACACTGCTTTCCTAGGGAATCTGCCCTATGATGT
GACAGAAGACTCTATTAAGGATTTCTTTAGAGGATTAAATATCAGCGCTGTACGCTTGCCGCGTGAGCCCAGCAATCCAG
ACAGGTTGAAAGGTTTTGGCTATGCCGAATTTGAGGATCTGGATTCTCTGCTCAGTGCTCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGGGTGGATGTTGCTGATCAAGCACAGGATAAAGACAGGGATGACCGTTCTTTTGGTCGAGA
TAGAAATCGGGATTCTGACAAGACAGACACAGACTGGAGGGCCCGTCCTGCCACAGACAGCTTTGATGACTACCCACCTA
GACGAGGTGATGACAGCTTCGGAGACAAGTATCGAGATCGTTACGAGTCAGACCGGTATCGGGATGGGTATAGGGACGGA
TATCGGGACGGCCCACGCAGAGACATGGACCGCTATGGGGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGA
CCGAGGCTATGACTCCAGGATAGGCAGTGGCAGAAGAGCATTTGGAAGTGGGTACCGGAGGGATGACGACTACAGAGGAG
GTGGGGACCGCTATGAAGATCGCTATGACAGACGGGACGATCGGTCATGGAGCTCCAGGGACGATTACTCTCGGGACGAT
TACAGGCGTGATGACAGAGGTCCCCCCCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAAGAAGATGATTC
CTCTGCTAGCACCTCCCAGTCCAGCCGAGCGGCTTCTATCTTTGGAGGGGCGAAGCCTGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAGGAGCGGCTACAGAAGGAGCAGGAGAAGCTGCAGCGTCAGCTGGATGAGCCAAAACTAGACCGCCGGCCC
CGGGAGAGACACCCAAGTTGGCGAAGTGAAGAAACTCAGGAAAGAGAACGGTCGAGGACAGGAAGTGAGTCATCGCAGAC
TGGGACCTCAGCCACATCTGGCAGAAATACACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACCCTCAATAAAG
AAGAAGACTGTCACTCTCCAACCTCTAAGCCTCCTAAACCTGACCAGCCTCTAAAGGTAATGCCAGCCCCTCCACCAAAG
GAGAATGCGTGGGTGAAGCGAAGCTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCAGCCGTCCCCTACAAG
TGGTGGAGGGAAAGTTGCTCCAGCTCAGCCCTCTGAGGAAGGACCATCAAGGAAAGATGAAACTAAAGTGGATGGGGTGA
GCACCACCAAAGGCCAGACTGGACACTCCAGCCGTGGTCCTGGGGATGGAGGGAGCAGAGACCACTGGAAGGAGTTGGAT
AGGAAGGACGGCAAAAAAGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAATCTGAGGAGAACCGAGCCTCTAAGTT
CAGTTCTGCAAGCAAGTACGCTGCTCTGTCTGTGGACGGTGAGGATGAGGATGAGGGAGACGACTGCACTGAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 176 .15 RPM
SRP017611_kidney 258 .40 RPM
SRP017611_liver 122 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012023 ortholog_one2many 2 retrogenes
retro_amel_1107, retro_amel_559,
Canis familiaris ENSCAFG00000007117 ortholog_one2many 2 retrogenes
retro_cfam_1447, retro_cfam_936,
Choloepus hoffmanni ENSCHOG00000001608 ortholog_one2many 2 retrogenes
retro_chof_1310, retro_chof_366,
Callithrix jacchus ENSCJAG00000018176 possible_ortholog 2 retrogenes
retro_cjac_1717, retro_cjac_2001,
Cavia porcellus ENSCPOG00000005595 possible_ortholog 3 retrogenes
retro_cpor_278, retro_cpor_752, retro_cpor_937,
Homo sapiens ENSG00000063046 possible_ortholog 7 retrogenes
retro_hsap_1686, retro_hsap_2639, retro_hsap_2698, retro_hsap_3767, retro_hsap_4196, retro_hsap_4848, retro_hsap_4891,
Gorilla gorilla ENSGGOG00000013695 possible_ortholog 5 retrogenes
retro_ggor_1233, retro_ggor_1263, retro_ggor_1882, retro_ggor_1883, retro_ggor_3024,
Loxodonta africana ENSLAFG00000009534 ortholog_one2many 1 retrogene
retro_lafr_294,
Macropus eugenii ENSMEUG00000012341 ortholog_one2many 2 retrogenes
retro_meug_1054, retro_meug_585,
Macaca mulatta ENSMMUG00000001062 possible_ortholog 5 retrogenes
retro_mmul_1428, retro_mmul_2384, retro_mmul_2589, retro_mmul_731, retro_mmul_783,
Mus musculus ENSMUSG00000058655 ortholog_one2many 1 retrogene
retro_mmus_3686,
Nomascus leucogenys ENSNLEG00000017727 possible_ortholog 3 retrogenes
retro_nleu_2371, retro_nleu_2601, retro_nleu_721,
Pongo abelii ENSPPYG00000025848 possible_ortholog 7 retrogenes
retro_pabe_1388, retro_pabe_1560, retro_pabe_2283, retro_pabe_260, retro_pabe_3532, retro_pabe_3768, retro_pabe_506,
Rattus norvegicus ENSRNOG00000001454 within_species_paralog 1 retrogene
retro_rnor_2924,
Ictidomys tridecemlineatus ENSSTOG00000006800 possible_ortholog 1 retrogene
retro_itri_604,
Tupaia belangeri ENSTBEG00000005423 possible_ortholog 2 retrogenes
retro_tbel_2363, retro_tbel_4167,
Tarsius syrichta ENSTSYG00000012880 ortholog_one2many 1 retrogene
retro_tsyr_452,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2467 61.37 50.41
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2. retro_rnor_2972 88.11 53.36
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Download FASTA sequences of all ENSRNOG00000010103 retrocopies