Parental gene:

EIF4B, ENSG00000063046

Aliases:EIF4B, EIF-4B, PRO1843
Description:eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285]
Organism:Human (Homo sapiens)
Coordinates:12:53399941..53435993(+)


>ENSG00000063046
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACAGACTTTCTGGCTGAGGATGGGGGTAC
TGGTGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACGGATGACCTGGAAGGAGATGTTTCGACCA
CTTGGCACAGTAACGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCGCCACCCTACACTGCTTTTCTAGGAAACCTACCCTATGATGT
TACAGAAGAGTCAATTAAGGAATTCTTTCGAGGATTAAATATCAGTGCAGTGCGTTTACCACGTGAACCCAGCAATCCAG
AGAGGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTCAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGATGATCGTTCTTTTGGCCGTGA
TAGAAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCTACAGACAGCTTTGATGACTACCCACCTA
GAAGAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGGGATGGGTATCGGGATGGG
TATCGGGATGGCCCACGCCGGGATATGGATCGATATGGTGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGA
TAGAGGCTATGATTCCCGGATAGGCAGTGGCAGAAGAGCATTTGGCAGTGGGTATCGCAGGGATGATGACTACAGAGGAG
GCGGGGACCGCTATGAAGACCGATATGACAGACGGGATGATCGGTCGTGGAGCTCCAGAGATGATTACTCTCGGGATGAT
TATAGGCGTGATGATAGAGGTCCCCCCCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAGGAAGATGATTC
CTCTGCTAGTACCTCCCAGTCCACTCGAGCTGCTTCTATCTTTGGAGGGGCAAAGCCTGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAAGAACGGCTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGATGAGCCAAAACTAGAACGACGGCCT
CGGGAGAGACACCCAAGCTGGCGAAGTGAAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAGTCATCACAAAC
TGGGACCTCCACCACATCTAGCAGAAATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACACTCAATAAGG
AGGAAGATTGCCACTCTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCAGCCCCTCCACCAAAG
GAGAATGCTTGGGTGAAGCGAAGTTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCAGCAGTCCCCTACAAG
TGGTGGGGGAAAAGTAGCTCCAGCTCAACCATCTGAGGAAGGACCAGGAAGGAAAGATGAAAATAAAGTAGATGGGATGA
ATGCCCCAAAAGGCCAAACTGGGAACTCTAGCCGTGGTCCAGGCGACGGAGGGAACAGAGACCACTGGAAGGAGTCAGAT
AGGAAAGATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAATCCAGCTTCCAAGTT
CAGTTCTGCAAGCAAGTATGCTGCTCTCTCTGTTGATGGTGAAGATGAAAATGAGGGAGAAGATTATGCCGAATAG

Library Parental gene expression (RPM)
bodymap2_adipose 703 .14 RPM
bodymap2_adrenal 434 .24 RPM
bodymap2_brain 232 .88 RPM
bodymap2_breast 442 .03 RPM
bodymap2_colon 722 .93 RPM
bodymap2_heart 297 .04 RPM
bodymap2_kidney 206 .91 RPM
bodymap2_liver 106 .15 RPM
bodymap2_lung 407 .72 RPM
bodymap2_lymph_node 454 .43 RPM
bodymap2_ovary 1147 .94 RPM
bodymap2_prostate 826 .01 RPM
bodymap2_skeletal_muscle 1007 .06 RPM
bodymap2_testis 372 .14 RPM
bodymap2_thyroid 489 .01 RPM
bodymap2_white_blood_cells 716 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018176 ortholog_one2one 2 retrogenes
retro_cjac_1717, retro_cjac_2001,
Cavia porcellus ENSCPOG00000005595 ortholog_one2many 3 retrogenes
retro_cpor_278, retro_cpor_752, retro_cpor_937,
Gorilla gorilla ENSGGOG00000013695 ortholog_one2many 5 retrogenes
retro_ggor_1233, retro_ggor_1263, retro_ggor_1882, retro_ggor_1883, retro_ggor_3024,
Loxodonta africana ENSLAFG00000009534 possible_ortholog 1 retrogene
retro_lafr_294,
Macropus eugenii ENSMEUG00000012341 ortholog_one2one 2 retrogenes
retro_meug_1054, retro_meug_585,
Macaca mulatta ENSMMUG00000001062 possible_ortholog 5 retrogenes
retro_mmul_1428, retro_mmul_2384, retro_mmul_2589, retro_mmul_731, retro_mmul_783,
Mus musculus ENSMUSG00000058655 ortholog_one2one 1 retrogene
retro_mmus_3686,
Nomascus leucogenys ENSNLEG00000017727 ortholog_one2one 3 retrogenes
retro_nleu_2371, retro_nleu_2601, retro_nleu_721,
Pongo abelii ENSPPYG00000025848 ortholog_one2one 7 retrogenes
retro_pabe_1388, retro_pabe_1560, retro_pabe_2283, retro_pabe_260, retro_pabe_3532, retro_pabe_3768, retro_pabe_506,
Rattus norvegicus ENSRNOG00000010103 possible_ortholog 2 retrogenes
retro_rnor_2467, retro_rnor_2972,
Ictidomys tridecemlineatus ENSSTOG00000006800 ortholog_one2one 1 retrogene
retro_itri_604,
Tupaia belangeri ENSTBEG00000005423 ortholog_one2one 2 retrogenes
retro_tbel_2363, retro_tbel_4167,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1686 83.94 71.36
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2. retro_hsap_2639 70.62 51.62
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3. retro_hsap_2698 87.08 62.34
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4. retro_hsap_3767 91.13 53.08
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5. retro_hsap_4196 93.34 99.84
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6. retro_hsap_4848 82.83 68.88
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7. retro_hsap_4891 90.36 67.13
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Download FASTA sequences of all ENSG00000063046 retrocopies