Parental gene: | EIF4B, ENSPPYG00000025848 |
| Aliases: | None |
| Description: | eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 12:52775255..52811944(+) |
>ENSPPYG00000025848
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACAGACTTTCTGGCTGAGGATGGGGGTAC
TGGTGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACAGATGACCTGGAAGGAGATGTTTCAACAA
CTTGGCACAGTAACGATGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCGCCACCCTACACTGCTTTTCTAGGAAACCTACCCTATGATGT
TACAGAAGAGTCAATTAAGGAATTCTTTCGAGGATTAAATATCAGTGCAGTGCGTTTACCACGTGAACCCAGCAATCCAG
AGAGGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTCAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGATGATCGTTCTTTTGGCCGTGA
TAGAAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCTACAGACAGCTTTGATGACTACCCACCTA
GAAGAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGGGATGGGTATCGGGATGGG
TATCGGGATGGCCCACGCCGGGATATGGATCGATATGGTGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGA
TAGAGGCTATGATTCCCGGATAGGCAGTGGCAGAAGAGCATTTGGCAGTGGGTATCGCAGGGATGATGACTACAGAGGAG
GCGGGGACCGCTATGAAGACCGATATGACAGACGGGATGATCGGTCGTGGAGCTCCAGAGATGATTACTCTCGGGATGAT
TATAGGCGTGATGATAGAGGTCCCCCCCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAGGAAGATGATTC
CTCTGCTAGTACCTCCCAGTCCACTCGAGCTGCTTCTATCTTTGGAGGGGCAAAGCCCGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAAGAACGGCTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGATGAGCCAAAACTAGAACGACGGCCT
CGGGAGAGACACCCAAGCTGGCGAAGTGAAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAGTCATCGCAGAC
TGGGACCTCCACCACATCTGGCAGAAATGCACGAAGGAGAGAGAGTGAAAAGTCTCTAGAAAATGAAACACTCAATAAGG
AGGAAGATTGCCACTCTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCAGCCCCTCCACCAAAG
GAGAATGCTTGGGTGAAGCGAAGTTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCAGCAATCCCCTACAAG
TGGTGGGGGAAAAGTAGCTCCAGCTCAACCATCTGAGGAAGGACCAGCAAGGAAAGATGAAAATAAAGTAGATGGGATGA
ATGTCCCAAAAGGCCAAACTGGGAACTCTAGCCGTGGTCCAGGAGACGGAGGGAACAAAGACCACTGGAAGGAGTCAGAT
AGGAAAGATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAATCCAGCTTCCAAGTT
CAGTTCTGCAAGCAAGTATGCTGCTCTCTCTGTTGATGGTGAAGATGAAAATGAGGGAGAAGATTATGCCGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 52 .30 RPM |
| SRP007412_cerebellum | 30 .52 RPM |
| SRP007412_heart | 59 .18 RPM |
| SRP007412_kidney | 74 .45 RPM |
| SRP007412_liver | 56 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018176 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000005595 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000063046 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013695 | ortholog_one2many | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000009534 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012341 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000001062 | possible_ortholog | 5 retrogenes | |
| Mus musculus | ENSMUSG00000058655 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017727 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000017489 | within_species_paralog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010103 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006800 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005423 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_260 | 94.90 | 51.23 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
| 2. | retro_pabe_506 | 78.55 | 53.03 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 3. | retro_pabe_1388 | 85.16 | 88.87 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 4. | retro_pabe_1560 | 95.85 | 90.67 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 5. | retro_pabe_2283 | 80.05 | 61.05 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 6. | retro_pabe_3532 | 95.83 | 89.69 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 7. | retro_pabe_3768 | 82.91 | 64.98 | Please wait, loading |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSPPYG00000025848 retrocopies