Parental gene:

EIF4B, ENSCJAG00000018176

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:41851458..41888445(+)


>ENSCJAG00000018176
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTTACAGACTTTCTGGCTGAGGATGGGGGAAC
TGGTGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACAGATGACCTGGAAGGAGATGTTTCAACAA
CTTGGCACAGTAATGACGACGATGTGTATAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCCAAATCACCACCCTACACTGCTTTTCTAGGGAACCTACCCTATGATGT
GACAGAAGAGTCAATTAAGGAATTCTTCAGAGGATTAAATATCAGTGCGGTGCGTTTACCACGTGAACCCAGCAATCCAG
AGAGGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTTAGTGCCCTGAGTCTCAATGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGACGATCGTTCTTTTGGCCGTGA
TAGAAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCCACAGATAGCTTTGATGACTACCCGCCTA
GAAGAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGCGATGGGTATCGGGATGGG
TACCGGGATGGCCCTCGCCGGGATATGGATCGATATGGCGGCCGGGATCGCTATGATGACCGAGGGAGCAGAGACTATGA
TAGAGGCTATGACTCCCGGATAGGCAGCGGCAGAAGAGCATTTGGCAGTGGATACCGCAGGGATGATGACTACAGAGGAG
GCGGGGACCGCTTTGAAGACCGATATTACAGACGGGATAATCGGTCATGGAGCTCCAGAGATGATTATTCTTGGGATGAT
TATAGGCGTGATGATAGAAGTCTGCCCCACAGACCCAAACTGAATCTAAAGCCTTGGAGTACTCCTAAGGAAGATGATTC
CTCTGCTAGTACCTCCCAGTCCAGTCGAGCTGCTTCTATCTTTGGAGGGGCAAAACCCGTTGACACAGCTGCTAGAGAAA
GAGAAGTAGAAGAACGACTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGACGAGCCAAAACTAGAAAGACGGCCT
CGGGAGAGACACCCAAGCTGGCGGAGTGAAGAAACTCAGGAACGGGAACGGTCAAGGACAGGAAGTGAGTCGTCGCAGAC
TGGGACTTCCGCCACATCTGGCAGAAGTAAGTCAGACCAGGATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATG
AAACACTCAGTAAGGAGGAAGATTGTCACTCTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCA
GCCCCTCCACCAAAGGAGAATGCTTGGGTGAAGCGAAGTTCTAACCCTCCTGCTCGATCTCAGAGCTCAGACACAGAGCA
GCAATCCCCTACAAGTGGTGGGGGCAAAGTGGCTCCAGCTCAACCATCTGAGGAAGGACCAGCCAGGAAAGATGAAAATA
AAATAGATGGGATGAATGTCCCGAAAGGCCAAACTGGGAACTCCAGCCGTGGTCCAGGAGACGGAGTGAACAAAGACCAC
TGGAAGGAGTCAGATCGGAAAGATGGCAAAAAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAA
TCCAGCTTCCATGTTCAGTTCTGCGAGCAAGTATGCTGCTCTCTCCGTTGATGGTGAAGATGAAAACGAGGGAGAAGATT
ATGCCGAATAG

Library Parental gene expression (RPM)
SRP051959_colon 171 .18 RPM
SRP051959_heart 187 .14 RPM
SRP051959_kidney 193 .02 RPM
SRP051959_liver 184 .59 RPM
SRP051959_lung 199 .21 RPM
SRP051959_lymph_node 224 .10 RPM
SRP051959_skeletal_muscle 200 .47 RPM
SRP051959_spleen 231 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005595 ortholog_one2many 3 retrogenes
retro_cpor_278, retro_cpor_752, retro_cpor_937,
Homo sapiens ENSG00000063046 ortholog_one2one 7 retrogenes
retro_hsap_1686, retro_hsap_2639, retro_hsap_2698, retro_hsap_3767, retro_hsap_4196, retro_hsap_4848, retro_hsap_4891,
Gorilla gorilla ENSGGOG00000013695 ortholog_one2many 5 retrogenes
retro_ggor_1233, retro_ggor_1263, retro_ggor_1882, retro_ggor_1883, retro_ggor_3024,
Loxodonta africana ENSLAFG00000009534 possible_ortholog 1 retrogene
retro_lafr_294,
Macropus eugenii ENSMEUG00000012341 ortholog_one2one 2 retrogenes
retro_meug_1054, retro_meug_585,
Macaca mulatta ENSMMUG00000001062 ortholog_one2many 5 retrogenes
retro_mmul_1428, retro_mmul_2384, retro_mmul_2589, retro_mmul_731, retro_mmul_783,
Mus musculus ENSMUSG00000058655 ortholog_one2one 1 retrogene
retro_mmus_3686,
Nomascus leucogenys ENSNLEG00000017727 ortholog_one2one 3 retrogenes
retro_nleu_2371, retro_nleu_2601, retro_nleu_721,
Pongo abelii ENSPPYG00000025848 ortholog_one2one 7 retrogenes
retro_pabe_1388, retro_pabe_1560, retro_pabe_2283, retro_pabe_260, retro_pabe_3532, retro_pabe_3768, retro_pabe_506,
Rattus norvegicus ENSRNOG00000010103 possible_ortholog 2 retrogenes
retro_rnor_2467, retro_rnor_2972,
Ictidomys tridecemlineatus ENSSTOG00000006800 ortholog_one2one 1 retrogene
retro_itri_604,
Tupaia belangeri ENSTBEG00000005423 ortholog_one2one 2 retrogenes
retro_tbel_2363, retro_tbel_4167,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1717 81.26 100.00
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2. retro_cjac_2001 78.52 80.22
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Download FASTA sequences of all ENSCJAG00000018176 retrocopies