Parental gene:

Sms, ENSRNOG00000007688

Aliases:None
Description:spermine synthase [Source:RefSeq peptide;Acc:NP_001029071]
Organism:Rat (Rattus norvegicus)
Coordinates:X:40674243..40725965(+)


>ENSRNOG00000007688
ATGGCAGCAGCAAGGCACAGCACGCTCGACTTCACGCTCGGCGCCAAAGCTGATGGTGAGGCCATTCTGAAAGGCCTTCA
GTCCATCTTTCAGGAGCAGGGGATGGCAGAGTCGGTGCACACCTGGCAGGACCATGGGTATTTAGCAACCTACACGAACA
AGAATGGCAGCTTTGCCAATTTGAGAATTTATCCACATGGATTGGTGTTGCTGGACCTTCAGAGTTACGACAGTGATGTG
CAAGGCAAACAAGAAACTGACTGCCTTTTGAATAAAATAGAAGAAAAAATGAAAGAATTGAGTCAAGACAGTACTGGTCG
GGTGAAGCGATTACCACCCATAGTTCGAGGAGGGGCCATTGACAGATACTGGCCTACTGCTGACGGGCGCCTGGTTGAGT
ATGACATAGATGAAGTGGTGTATGACGAAGACTCACCTTATCAGAACATTAAAATTCTTCACTCAAAGCAGTTTGGGAAT
ATTCTCATCCTCAGCGGGGATGTTAATTTGGCAGAGAGTGACTTGGCATATACCAGGGCCATCATGGGCAATGGTAAAGA
AGACTACACTGGCAAAGATGTACTGATTCTGGGAGGCGGCGATGGAGGCATATTATGTGAAATTGTCAAACTGAAACCAA
AGATGGTCACTATGGTAGAGATTGACCAGATGGTAATTGATGGATGTAAGAAATACATGCGCAGAACATGTGGAGATGTC
TTAGACAATCTTAAAGGAGATTGCTATCAGGTTCTTATAGAAGACTGTATTCCAGTACTGAAGAGGTACGCCAAAGAAGG
GAGAGAGTTTGATTATGTGATTAATGATTTGACAGCTGTCCCTATCTCTACATCTCCAGAAGAAGATTCCACATGGGAGT
TTCTCAGACTGATTCTTGACCTGTCAATGAAGGTTCTGAAACAGGATGGAAAATATTTCACACAGGGGAACTGTGTCAAC
TTGACTGAAGCCCTGTCGCTCTATGAAGAACAGCTGGGGCGCCTGTATTGTCCTGTGGAATTCTCAAAAGAGATTGTCTG
TGTCCCTTCATACTTGGAATTGTGGGTATTTTACACTGTTTGGAAGAAAGCTAAGCCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 32 .64 RPM
SRP017611_kidney 11 .86 RPM
SRP017611_liver 2 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018382 possible_ortholog 1 retrogene
retro_btau_1412,
Canis familiaris ENSCAFG00000013284 possible_ortholog 3 retrogenes
retro_cfam_1076, retro_cfam_1995, retro_cfam_613,
Callithrix jacchus ENSCJAG00000033933 ortholog_many2many 1 retrogene
retro_cjac_518,
Cavia porcellus ENSCPOG00000006176 ortholog_one2many 2 retrogenes
retro_cpor_729, retro_cpor_889,
Echinops telfairi ENSETEG00000010098 ortholog_one2many 2 retrogenes
retro_etel_1066, retro_etel_1540,
Homo sapiens ENSG00000102172 ortholog_one2many 5 retrogenes
retro_hsap_243, retro_hsap_3168, retro_hsap_3193, retro_hsap_3611, retro_hsap_4826,
Gorilla gorilla ENSGGOG00000003123 ortholog_many2many 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Microcebus murinus ENSMICG00000000192 possible_ortholog 3 retrogenes
retro_mmur_1421, retro_mmur_1484, retro_mmur_699,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Macaca mulatta ENSMMUG00000020392 ortholog_one2many 2 retrogenes
retro_mmul_2003, retro_mmul_2574,
Monodelphis domestica ENSMODG00000007897 ortholog_many2many 1 retrogene
retro_mdom_412,
Mus musculus ENSMUSG00000071708 ortholog_one2many 6 retrogenes
retro_mmus_2162, retro_mmus_2170, retro_mmus_2837, retro_mmus_3502, retro_mmus_3628, retro_mmus_994,
Nomascus leucogenys ENSNLEG00000009955 ortholog_one2many 4 retrogenes
retro_nleu_1664, retro_nleu_2200, retro_nleu_2208, retro_nleu_2755,
Oryctolagus cuniculus ENSOCUG00000006016 possible_ortholog 2 retrogenes
retro_ocun_1458, retro_ocun_1918,
Pongo abelii ENSPPYG00000020182 ortholog_one2many 4 retrogenes
retro_pabe_2649, retro_pabe_2810, retro_pabe_3752, retro_pabe_38,
Pteropus vampyrus ENSPVAG00000016785 possible_ortholog 1 retrogene
retro_pvam_524,
Tupaia belangeri ENSTBEG00000012109 ortholog_one2many 3 retrogenes
retro_tbel_1630, retro_tbel_1893, retro_tbel_3570,
Vicugna pacos ENSVPAG00000007543 possible_ortholog 1 retrogene
retro_vpac_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_938 98.63 100.00
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2. retro_rnor_1934 99.73 100.00
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Download FASTA sequences of all ENSRNOG00000007688 retrocopies