Parental gene:

ENSCAFG00000013284

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:X:17773466..17802863(+)


>ENSCAFG00000013284
TGTGTAGCCTCTCGTCACGGCCTGACCACCTTGCCTTCTGTCTCCTCTTCTCCAGCTGATGGCGAGACCATTCTAAAAGG
CCTCCAGTCCATTTTCCAGGAGCAAGGGATGACGGAGTCGGTGCACACCTGGCAAGACCATGGTTATCTAGCGACCTACA
TAAACAAAAATGGCAGCTTTGCCAATTTGAGAATTTACCCACATGGATTGGTGTTGTTGGATCTTCAGAGTTATGATGGT
GATTCGCAAGGCCAAGAAGTTGACAGTCTTTTGAACAAAGTAGAAGAAAGAATGAAAGAATTGAGTCAGGACAGTACTGG
GCGGGTGAAGCGATTACCACCCATAGTTCGAGGAGGGGCCATCGACAGATACTGGCCCACTGCTGATGGTCGCCTGGTTG
AGTATGACATAGATGAAGTGGTGTATGATGAAGATTCACCTTATCAGAACATTAAAATTCTACACTCGAAGCAGTTTGGA
AATATTCTCATCCTTAGTGGGGATGTTAATCTGGCGGAGAGTGATTTGGCATATACCCAGGCCATCATGGGCAGTGGAAA
AGAAGATTACAGTGGCAAAGATGTACTGATTCTCGGGGGTGGAGATGGGGGCATATTATGTGAAATAGTCAAACTGAAAC
CAAAGATGGTCACTATGACTTGTTTGAACATCGACCAAATGGTGATTGATGGATGTAAGAAATACATGCGGAAAACATGT
GGCGACGTCTTAGACAATCTTAAAGGAGACTGCTATCAGGTTCTAATAGAAGACTGTATTCCAGTACTGAAGAGGTACGC
CAAAGAAGGGAGAGAGTTTGATTATGTGATTAATGATTTGACAGCTGTTCCAATCTCCACGTCTCCAGAAGAAGATTCCA
CATGGGAGTTTCTCAGACTGATTCTTGACCTCTCAATGAAAGTACTGAAACAGGATGGGAAATATTTTACACAGGGTAAC
TGTGTGAATTTGACGGAAGCCTTGTCGCTCTATGAAGAACAGCTTGGGCGCCTGTATTGTCCTGTGGAATTCTCAAAGGA
GATCGTCTGTGTTCCCTCATACTTGGAATTGTGGGTATTTTACACTGTTTGGAAGAAAGCTAAACCTTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 51 .78 RPM
SRP017611_brain 41 .28 RPM
SRP017611_kidney 196 .20 RPM
SRP017611_liver 19 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018382 ortholog_one2one 1 retrogene
retro_btau_1412,
Callithrix jacchus ENSCJAG00000033933 possible_ortholog 1 retrogene
retro_cjac_518,
Cavia porcellus ENSCPOG00000006176 possible_ortholog 2 retrogenes
retro_cpor_729, retro_cpor_889,
Echinops telfairi ENSETEG00000010098 ortholog_one2many 2 retrogenes
retro_etel_1066, retro_etel_1540,
Homo sapiens ENSG00000102172 possible_ortholog 5 retrogenes
retro_hsap_243, retro_hsap_3168, retro_hsap_3193, retro_hsap_3611, retro_hsap_4826,
Gorilla gorilla ENSGGOG00000003123 possible_ortholog 3 retrogenes
retro_ggor_1335, retro_ggor_2437, retro_ggor_3009,
Microcebus murinus ENSMICG00000000192 possible_ortholog 3 retrogenes
retro_mmur_1421, retro_mmur_1484, retro_mmur_699,
Myotis lucifugus ENSMLUG00000013185 possible_ortholog 3 retrogenes
retro_mluc_471, retro_mluc_530, retro_mluc_92,
Macaca mulatta ENSMMUG00000020392 possible_ortholog 2 retrogenes
retro_mmul_2003, retro_mmul_2574,
Monodelphis domestica ENSMODG00000007897 ortholog_many2many 1 retrogene
retro_mdom_412,
Mus musculus ENSMUSG00000071708 possible_ortholog 6 retrogenes
retro_mmus_2162, retro_mmus_2170, retro_mmus_2837, retro_mmus_3502, retro_mmus_3628, retro_mmus_994,
Nomascus leucogenys ENSNLEG00000009955 possible_ortholog 4 retrogenes
retro_nleu_1664, retro_nleu_2200, retro_nleu_2208, retro_nleu_2755,
Oryctolagus cuniculus ENSOCUG00000006016 possible_ortholog 2 retrogenes
retro_ocun_1458, retro_ocun_1918,
Pongo abelii ENSPPYG00000020182 possible_ortholog 4 retrogenes
retro_pabe_2649, retro_pabe_2810, retro_pabe_3752, retro_pabe_38,
Pteropus vampyrus ENSPVAG00000016785 ortholog_one2one 1 retrogene
retro_pvam_524,
Rattus norvegicus ENSRNOG00000007688 possible_ortholog 2 retrogenes
retro_rnor_1934, retro_rnor_938,
Tupaia belangeri ENSTBEG00000012109 possible_ortholog 3 retrogenes
retro_tbel_1630, retro_tbel_1893, retro_tbel_3570,
Vicugna pacos ENSVPAG00000007543 ortholog_one2one 1 retrogene
retro_vpac_50,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_613 83.64 72.63
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2. retro_cfam_1076 88.67 97.83
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3. retro_cfam_1995 90.27 79.40
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Download FASTA sequences of all ENSCAFG00000013284 retrocopies