Parental gene: | Sms, ENSMUSG00000071708 |
| Aliases: | Sms, AI427066, Gy, SPMSY, SpmST, gyro |
| Description: | spermine synthase [Source:MGI Symbol;Acc:MGI:109490] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | X:157443854..157492287(-) |
>ENSMUSG00000071708
ATGGCAGCAGCAAGACACAGCACGCTCGACTTCAAGCTCGGCGCCAAAGCTGATGGTGAGGCCATTCTGAAAGGCCTTCA
GTCCATTTTTCAGGAGCAGGGGATGACAGAGTCAGTGCACACCTGGCAGGACCATGGATATTTAGCAACTTACACGAACA
AGAATGGCAGCTTTGCCAATTTGCGAATTTATCCACATGGATTGGTGTTGCTGGACCTTCAGAGTTACGACAGTGATGTG
CAAGGCAAACAAGAAACTGACAGCCTTTTGAACAAAATAGAAGAAAAAATGAAAGAATTGAGTCAAGACAGTACTGGGCG
GGTGAAGCGATTACCACCCATAGTTCGCGGAGGGGCCATTGACAGATACTGGCCTACTGCTGATGGGCGCCTGGTTGAGT
ATGACATAGATGAAGTGGTGTATGATGAAGATTCACCATATCAGAACATCAAAATCCTACACTCGAAGCAGTTTGGGAAT
ATTCTCATCCTCAGCGGGGATGTTAATTTGGCAGAGAGTGACTTGGCATATACCCGTGCCATCATGGGCAGTGGTAAAGA
AGACTACACTGGCAAAGATGTACTGATTCTGGGAGGCGGCGATGGAGGCATATTGTGTGAAATTGTCAAACTGAAACCAA
AGATGGTCACTATGGTAGAGATTGACCAAATGGTAATTGATGGATGTAAGAAATACATGCGGAGAACATGTGGAGATGTC
TTAGACAATCTTAGAGGAGACTGCTATCAGGTTCTTATAGAAGACTGTATCCCAGTACTGAAGATGTACGCCAAAGAAGG
GAGAGAGTTTGATTATGTGATTAATGATTTGACAGCTGTCCCTATCTCTACATCTCCAGAAGAAGATTCCACATGGGATT
TCCTCAGACTGATTCTCGACCTGTCAATGAAGGTTCTGAAACAGGATGGAAAATACTTCACACAGGGGAACTGTGTCAAC
TTGACTGAAGCCCTGTCGCTCTATGAAGAACAGCTGGGGCGTCTGTATTGTCCTGTGGAATTCTCAAAAGAGATTGTCTG
TGTCCCTTCATACTTGGAATTGTGGGTGTTTTACACTGTTTGGAAGAAAGCTAAGCCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 66 .02 RPM |
| SRP007412_cerebellum | 67 .91 RPM |
| SRP007412_heart | 24 .97 RPM |
| SRP007412_kidney | 31 .51 RPM |
| SRP007412_liver | 2 .79 RPM |
| SRP007412_testis | 2 .24 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000013284 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000033933 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006176 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000010098 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000102172 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003123 | ortholog_one2many | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013185 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000020392 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000007897 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009955 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000020182 | ortholog_one2one | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007688 | ortholog_one2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000012109 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_994 | 84.47 | 55.74 | Please wait, loading  |
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| 2. | retro_mmus_2162 | 90.00 | 100.00 | Please wait, loading |
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| 3. | retro_mmus_2170 | 93.85 | 66.39 | Please wait, loading |
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| 4. | retro_mmus_2837 | 88.93 | 75.96 | Please wait, loading |
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| 5. | retro_mmus_3502 | 90.74 | 73.50 | Please wait, loading |
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| 6. | retro_mmus_3628 | 100.00 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSMUSG00000071708 retrocopies