Parental gene:

Ube2l3, ENSRNOG00000001862

Aliases:None
Description:ubiquitin-conjugating enzyme E2 L3 [Source:RefSeq peptide;Acc:NP_001102317]
Organism:Rat (Rattus norvegicus)
Coordinates:11:91100272..91139662(+)


>ENSRNOG00000001862
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAGATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGAGCCTTCAGAATTG
AGATCAACTTCCCAGCAGAGTATCCCTTCAAGCCACCCAAGATCACATTTAAAACAAAGATCTACCACCCTAACATCGAC
GAGAAGGGGCAGGTCTGTCTGCCCGTAATTAGTGCGGAAAACTGGAAGCCGGCCACCAAGACTGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAACGACCCTCAGCCTGAGCACCCACTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAA

Library Parental gene expression (RPM)
SRP017611_brain 75 .56 RPM
SRP017611_kidney 93 .65 RPM
SRP017611_liver 42 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015284 ortholog_one2one 1 retrogene
retro_cfam_1090,
Cavia porcellus ENSCPOG00000006044 ortholog_one2one 2 retrogenes
retro_cpor_692, retro_cpor_835,
Equus caballus ENSECAG00000019274 possible_ortholog 1 retrogene
retro_ecab_116,
Felis catus ENSFCAG00000008008 ortholog_one2one 1 retrogene
retro_fcat_369,
Myotis lucifugus ENSMLUG00000001547 possible_ortholog 1 retrogene
retro_mluc_32,
Monodelphis domestica ENSMODG00000017665 ortholog_one2one 2 retrogenes
retro_mdom_2029, retro_mdom_956,
Mus musculus ENSMUSG00000038965 ortholog_one2one 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Pongo abelii ENSPPYG00000011602 ortholog_one2one 1 retrogene
retro_pabe_99,
Pan troglodytes ENSPTRG00000014114 possible_ortholog 1 retrogene
retro_ptro_123,
Rattus norvegicus ENSRNOG00000004544 other_paralog 1 retrogene
retro_rnor_1236,
Rattus norvegicus ENSRNOG00000008794 other_paralog 3 retrogenes
retro_rnor_1632, retro_rnor_2291, retro_rnor_2343,
Rattus norvegicus ENSRNOG00000013741 within_species_paralog 9 retrogenes
retro_rnor_2777, retro_rnor_342, retro_rnor_345, retro_rnor_539, retro_rnor_650, retro_rnor_724, retro_rnor_725, retro_rnor_772, retro_rnor_784,
Tetraodon nigroviridis ENSTNIG00000010600 ortholog_one2many 1 retrogene
retro_tnig_16,
Takifugu rubripes ENSTRUG00000003392 ortholog_one2one 1 retrogene
retro_trub_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_526 82.81 83.12
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2. retro_rnor_1602 86.45 100.00
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3. retro_rnor_2633 83.97 100.00
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4. retro_rnor_2799 75.32 99.35
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Download FASTA sequences of all ENSRNOG00000001862 retrocopies