Parental gene:

UBE2L3, ENSCPOG00000006044

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:19581478..19640343(+)


>ENSCPOG00000006044
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAGATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGACAAGGGGGCCTTTAGAATTG
AAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACGTTTAAAACAAAGATCTATCACCCAAACATTGAT
GAAAAAGGGCAAGTTTGCCTGCCAGTAATTAGTGCTGAGAACTGGAAGCCAGCGACCAAGACCGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAATGACCCCCAGCCCGAGCACCCGCTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGAC

Library Parental gene expression (RPM)
SRP017611_brain 25 .77 RPM
SRP017611_kidney 40 .72 RPM
SRP017611_liver 29 .95 RPM
SRP040447_lung 28 .07 RPM
SRP040447_skeletal_muscle 25 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015284 ortholog_one2one 1 retrogene
retro_cfam_1090,
Cavia porcellus ENSCPOG00000002251 other_paralog 2 retrogenes
retro_cpor_1036, retro_cpor_52,
Equus caballus ENSECAG00000019274 possible_ortholog 1 retrogene
retro_ecab_116,
Felis catus ENSFCAG00000008008 ortholog_one2one 1 retrogene
retro_fcat_369,
Myotis lucifugus ENSMLUG00000001547 possible_ortholog 1 retrogene
retro_mluc_32,
Monodelphis domestica ENSMODG00000017665 ortholog_one2one 2 retrogenes
retro_mdom_2029, retro_mdom_956,
Mus musculus ENSMUSG00000038965 ortholog_one2one 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Pongo abelii ENSPPYG00000011602 ortholog_one2one 1 retrogene
retro_pabe_99,
Pan troglodytes ENSPTRG00000014114 possible_ortholog 1 retrogene
retro_ptro_123,
Rattus norvegicus ENSRNOG00000001862 ortholog_one2one 4 retrogenes
retro_rnor_1602, retro_rnor_2633, retro_rnor_2799, retro_rnor_526,
Tetraodon nigroviridis ENSTNIG00000010600 ortholog_one2many 1 retrogene
retro_tnig_16,
Takifugu rubripes ENSTRUG00000003392 ortholog_one2one 1 retrogene
retro_trub_39,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_692 91.56 100.00
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2. retro_cpor_835 69.74 97.40
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Download FASTA sequences of all ENSCPOG00000006044 retrocopies