Parental gene:

Ube2d3, ENSRNOG00000013741

Aliases:None
Description:ubiquitin-conjugating enzyme E2 D3 [Source:RefSeq peptide;Acc:NP_112516]
Organism:Rat (Rattus norvegicus)
Coordinates:2:259159894..259175013(+)


>ENSRNOG00000013741
CTAGCATTAAAGAGATTACATAAAGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGG
AGATGACATGTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGTGGTGTATTCTTTTTGACAA
TTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCATTTGTCTTGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTG
TTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGACAAGT
ACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGA

Library Parental gene expression (RPM)
SRP017611_brain 133 .66 RPM
SRP017611_kidney 209 .77 RPM
SRP017611_liver 130 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000018711 ortholog_many2many 2 retrogenes
retro_cint_19, retro_cint_29,
Ciona savignyi ENSCSAVG00000006136 ortholog_many2many 1 retrogene
retro_csav_18,
Dasypus novemcinctus ENSDNOG00000009320 ortholog_one2one 30 retrogenes
retro_dnov_1061, retro_dnov_1125, retro_dnov_113, retro_dnov_114, retro_dnov_1167, retro_dnov_1193, retro_dnov_1198, retro_dnov_1257, retro_dnov_141, retro_dnov_1544, retro_dnov_1752, retro_dnov_1761, retro_dnov_1831, retro_dnov_1862, retro_dnov_1912, retro_dnov_1934, retro_dnov_1995, retro_dnov_2084, retro_dnov_2135, retro_dnov_2289, retro_dnov_2362, retro_dnov_2457, retro_dnov_2622, retro_dnov_436, retro_dnov_574, retro_dnov_750, retro_dnov_795, retro_dnov_83, retro_dnov_889, retro_dnov_917,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Ochotona princeps ENSOPRG00000011695 ortholog_one2one 9 retrogenes
retro_opri_1042, retro_opri_1189, retro_opri_206, retro_opri_310, retro_opri_447, retro_opri_457, retro_opri_627, retro_opri_77, retro_opri_838,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Rattus norvegicus ENSRNOG00000001862 within_species_paralog 4 retrogenes
retro_rnor_1602, retro_rnor_2633, retro_rnor_2799, retro_rnor_526,
Rattus norvegicus ENSRNOG00000004544 other_paralog 1 retrogene
retro_rnor_1236,
Rattus norvegicus ENSRNOG00000008794 other_paralog 3 retrogenes
retro_rnor_1632, retro_rnor_2291, retro_rnor_2343,
Sus scrofa ENSSSCG00000024306 possible_ortholog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 possible_ortholog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Ictidomys tridecemlineatus ENSSTOG00000013481 possible_ortholog 6 retrogenes
retro_itri_1222, retro_itri_1474, retro_itri_1628, retro_itri_463, retro_itri_672, retro_itri_998,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_342 90.48 100.00
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2. retro_rnor_345 83.67 100.00
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3. retro_rnor_539 69.63 91.84
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4. retro_rnor_650 60.82 63.95
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5. retro_rnor_724 76.92 61.90
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6. retro_rnor_725 77.17 62.59
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7. retro_rnor_772 69.57 62.59
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8. retro_rnor_784 73.63 61.90
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9. retro_rnor_2777 75.78 87.07
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Download FASTA sequences of all ENSRNOG00000013741 retrocopies