Parental gene:

ENSPTRG00000013564

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:42808888..42812836(+)


>ENSPTRG00000013564
ATGGCTTCCCAAAACCGCGACCCAGCCGCCACTAGCGTTGCCGCCGCCCGTAAAGGAGCTGAGCCGAGCGGGGGCGCCGC
CCGGGGTCCGGTGGGCAAAAGGCTACAGCAGGAGCTGATGACCCTCATGATGTCTGGCGATAAAGGGATTTCTGCCTTCC
CTGAATCAGACAACCTTTTCAAATGGGTAGGGACCATCCATGGAGCAGCTGGAACAGTATATGAAGACCTGAGGTATAAG
CTCTCGCTAGAGTTCCCCAGTGGCTACCCTTACAATGCGCCCACAGTGAAGTTCCTCACGCCCTGCTATCACCCCAACGT
GGACACCCAGGGTAACATATGCCTGGACATCCTGAAGGAAAAGTGGTCTGCCCTGTATGACGTCAGGACCATTCTGCTCT
CCATCCAGAGCCTTCTAGGAGAACCCAACATTGATAGTCCCTTGAACACGCATGCTGCCGAGCTCTGGAAAAACCCCACA
GCTTTTAAGAAGTACCTGCAAGAAACCTACTCAAAGCAGGTCACCAGCCAGGAGCCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .02 RPM
SRP007412_cerebellum 0 .50 RPM
SRP007412_heart 0 .20 RPM
SRP007412_kidney 0 .24 RPM
SRP007412_liver 0 .75 RPM
SRP007412_testis 0 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012547 possible_ortholog 5 retrogenes
retro_amel_1122, retro_amel_1353, retro_amel_157, retro_amel_1621, retro_amel_635,
Bos taurus ENSBTAG00000016746 possible_ortholog 1 retrogene
retro_btau_249,
Canis familiaris ENSCAFG00000009745 possible_ortholog 6 retrogenes
retro_cfam_1031, retro_cfam_1805, retro_cfam_1878, retro_cfam_2078, retro_cfam_290, retro_cfam_356,
Choloepus hoffmanni ENSCHOG00000005054 possible_ortholog 1 retrogene
retro_chof_902,
Cavia porcellus ENSCPOG00000014102 ortholog_one2many 2 retrogenes
retro_cpor_1007, retro_cpor_211,
Dipodomys ordii ENSDORG00000011774 ortholog_one2many 4 retrogenes
retro_dord_157, retro_dord_386, retro_dord_421, retro_dord_84,
Equus caballus ENSECAG00000014619 possible_ortholog 2 retrogenes
retro_ecab_297, retro_ecab_316,
Erinaceus europaeus ENSEEUG00000010643 possible_ortholog 14 retrogenes
retro_eeur_113, retro_eeur_177, retro_eeur_249, retro_eeur_253, retro_eeur_266, retro_eeur_272, retro_eeur_294, retro_eeur_346, retro_eeur_375, retro_eeur_518, retro_eeur_592, retro_eeur_604, retro_eeur_641, retro_eeur_80,
Echinops telfairi ENSETEG00000012346 possible_ortholog 18 retrogenes
retro_etel_1212, retro_etel_1500, retro_etel_1560, retro_etel_157, retro_etel_1634, retro_etel_1729, retro_etel_1853, retro_etel_1856, retro_etel_2013, retro_etel_221, retro_etel_321, retro_etel_324, retro_etel_400, retro_etel_628, retro_etel_689, retro_etel_764, retro_etel_824, retro_etel_909,
Felis catus ENSFCAG00000001885 possible_ortholog 4 retrogenes
retro_fcat_1440, retro_fcat_1530, retro_fcat_1667, retro_fcat_1734,
Homo sapiens ENSG00000175063 ortholog_one2many 3 retrogenes
retro_hsap_1474, retro_hsap_1922, retro_hsap_2935,
Gorilla gorilla ENSGGOG00000026061 ortholog_one2many 3 retrogenes
retro_ggor_1130, retro_ggor_1402, retro_ggor_2035,
Loxodonta africana ENSLAFG00000003164 possible_ortholog 1 retrogene
retro_lafr_73,
Macropus eugenii ENSMEUG00000007177 ortholog_one2many 14 retrogenes
retro_meug_1021, retro_meug_1128, retro_meug_1203, retro_meug_1398, retro_meug_1435, retro_meug_145, retro_meug_1476, retro_meug_1504, retro_meug_1575, retro_meug_1773, retro_meug_1808, retro_meug_2034, retro_meug_334, retro_meug_645,
Microcebus murinus ENSMICG00000011218 possible_ortholog 2 retrogenes
retro_mmur_332, retro_mmur_988,
Myotis lucifugus ENSMLUG00000006715 ortholog_one2many 4 retrogenes
retro_mluc_2164, retro_mluc_2220, retro_mluc_600, retro_mluc_636,
Macaca mulatta ENSMMUG00000021023 possible_ortholog 4 retrogenes
retro_mmul_1345, retro_mmul_170, retro_mmul_1951, retro_mmul_777,
Monodelphis domestica ENSMODG00000013661 ortholog_one2many 6 retrogenes
retro_mdom_1549, retro_mdom_1552, retro_mdom_1732, retro_mdom_1970, retro_mdom_2020, retro_mdom_415,
Mustela putorius furo ENSMPUG00000017619 possible_ortholog 2 retrogenes
retro_mputfur_103, retro_mputfur_189,
Mus musculus ENSMUSG00000001403 ortholog_one2many 5 retrogenes
retro_mmus_1344, retro_mmus_1593, retro_mmus_1770, retro_mmus_2881, retro_mmus_3512,
Oryctolagus cuniculus ENSOCUG00000012176 possible_ortholog 3 retrogenes
retro_ocun_1005, retro_ocun_1294, retro_ocun_348,
Otolemur garnettii ENSOGAG00000004989 possible_ortholog 3 retrogenes
retro_ogar_2347, retro_ogar_249, retro_ogar_3067,
Ochotona princeps ENSOPRG00000014284 ortholog_one2many 4 retrogenes
retro_opri_1009, retro_opri_1055, retro_opri_222, retro_opri_50,
Pongo abelii ENSPPYG00000011071 ortholog_one2many 4 retrogenes
retro_pabe_1155, retro_pabe_1221, retro_pabe_1589, retro_pabe_2519,
Pteropus vampyrus ENSPVAG00000000369 ortholog_one2many 1 retrogene
retro_pvam_423,
Rattus norvegicus ENSRNOG00000015131 ortholog_one2many 5 retrogenes
retro_rnor_1390, retro_rnor_2131, retro_rnor_2470, retro_rnor_719, retro_rnor_864,
Sarcophilus harrisii ENSSHAG00000002117 possible_ortholog 1 retrogene
retro_shar_832,
Sus scrofa ENSSSCG00000007423 possible_ortholog 1 retrogene
retro_sscr_643,
Tursiops truncatus ENSTTRG00000015987 ortholog_one2many 1 retrogene
retro_ttru_1752,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_38 100.00 100.00
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Download FASTA sequences of all ENSPTRG00000013564 retrocopies