Parental gene:

Ube2c, ENSRNOG00000015131

Aliases:None
Description:ubiquitin-conjugating enzyme E2 C [Source:RefSeq peptide;Acc:NP_001100012]
Organism:Rat (Rattus norvegicus)
Coordinates:3:167422568..167424969(+)


>ENSRNOG00000015131
ATGGCCTCGCAGAACCGCGACCCAGCTGCAGCCAGCGTTGCCGCCGTTCGAAAAGGAGCAGAACCCTGCGGGGGCGCCGC
CCGGGGCCCTGTGGGCAAGAGGCTACAGCAGGAGCTGATGACCCTCATGATGTCTGGTGACAAAGGAATTTCCGCCTTCC
CCGAATCAGACAACCTGTTCAAATGGGTAGGAACCATCCATGGAGCCGCCGGCACTGTATATGAAGACCTGAGGTATAAA
CTCTCCCTAGAGTTCCCCAGTGGCTACCCTTACAACGCACCCACAGTGAAGTTCCTCACACCGTGCTACCACCCCAACGT
GGACACCCAGGGCAACATCTGCCTGGACATCCTCAAGGACAAGTGGTCTGCACTGTATGATGTCAGGACCATCTTGCTCT
CCATCCAGAGCCTGCTAGGAGAACCCAACATCGAGAGCCCTTTGAACACACATGCTGCAGAGCTCTGGAAAAACCCCACA
GCATTTAAGAAGTACCTGCAAGAAACATATTCAAAGCAGGTCTCCAACCAAGAGCCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 0 .58 RPM
SRP017611_kidney 0 .91 RPM
SRP017611_liver 0 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000014102 ortholog_one2one 2 retrogenes
retro_cpor_1007, retro_cpor_211,
Dipodomys ordii ENSDORG00000011774 ortholog_one2one 4 retrogenes
retro_dord_157, retro_dord_386, retro_dord_421, retro_dord_84,
Homo sapiens ENSG00000175063 ortholog_one2one 3 retrogenes
retro_hsap_1474, retro_hsap_1922, retro_hsap_2935,
Gorilla gorilla ENSGGOG00000026061 ortholog_one2one 3 retrogenes
retro_ggor_1130, retro_ggor_1402, retro_ggor_2035,
Macropus eugenii ENSMEUG00000007177 ortholog_one2one 14 retrogenes
retro_meug_1021, retro_meug_1128, retro_meug_1203, retro_meug_1398, retro_meug_1435, retro_meug_145, retro_meug_1476, retro_meug_1504, retro_meug_1575, retro_meug_1773, retro_meug_1808, retro_meug_2034, retro_meug_334, retro_meug_645,
Myotis lucifugus ENSMLUG00000006715 ortholog_one2one 4 retrogenes
retro_mluc_2164, retro_mluc_2220, retro_mluc_600, retro_mluc_636,
Macaca mulatta ENSMMUG00000021023 possible_ortholog 4 retrogenes
retro_mmul_1345, retro_mmul_170, retro_mmul_1951, retro_mmul_777,
Monodelphis domestica ENSMODG00000013661 ortholog_one2one 6 retrogenes
retro_mdom_1549, retro_mdom_1552, retro_mdom_1732, retro_mdom_1970, retro_mdom_2020, retro_mdom_415,
Mus musculus ENSMUSG00000001403 ortholog_one2one 5 retrogenes
retro_mmus_1344, retro_mmus_1593, retro_mmus_1770, retro_mmus_2881, retro_mmus_3512,
Otolemur garnettii ENSOGAG00000004989 possible_ortholog 3 retrogenes
retro_ogar_2347, retro_ogar_249, retro_ogar_3067,
Ochotona princeps ENSOPRG00000014284 ortholog_one2one 4 retrogenes
retro_opri_1009, retro_opri_1055, retro_opri_222, retro_opri_50,
Pongo abelii ENSPPYG00000011071 ortholog_one2one 4 retrogenes
retro_pabe_1155, retro_pabe_1221, retro_pabe_1589, retro_pabe_2519,
Pan troglodytes ENSPTRG00000013564 ortholog_one2many 1 retrogene
retro_ptro_38,
Pteropus vampyrus ENSPVAG00000000369 ortholog_one2one 1 retrogene
retro_pvam_423,
Tursiops truncatus ENSTTRG00000015987 ortholog_one2one 1 retrogene
retro_ttru_1752,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_719 89.57 90.50
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2. retro_rnor_864 85.08 100.00
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3. retro_rnor_1390 62.18 83.24
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4. retro_rnor_2131 89.88 93.30
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5. retro_rnor_2470 73.12 50.84
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Download FASTA sequences of all ENSRNOG00000015131 retrocopies