Parental gene:

RPL18A, ENSPPYG00000009725

Aliases:None
Description:ribosomal protein L18a [Source:HGNC Symbol;Acc:10311]
Organism:Orangutan (Pongo abelii)
Coordinates:19:18301129..18304630(+)


>ENSPPYG00000009725
ATGAAGGCCTCCGGCACACTACGAGAGTACAAGGTAGTGGGTCGCTGCCTGCCCACCCCCAAATGCCACACACCGCCCCT
CTACCGCATGCGAATCTTTGCACCTAATCATGTCGTCGCCAAGTCCCGCTTCTGGTACTTCGTATCTCAGTTAAAGAAAA
TGAAGAAGTCTTCAGGGGAGATTGTCTACTGTGGTCAGGTGTTTGAGAAGTCCCCCCTGCGGGTGAAGAATTTCGGGATC
TGGCTGCGCTATGACTCCCGGAGTGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCAC
CCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGGGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCGCGG
CCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGC
CGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 83 .71 RPM
SRP007412_cerebellum 50 .95 RPM
SRP007412_heart 66 .02 RPM
SRP007412_kidney 149 .33 RPM
SRP007412_liver 162 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003125 ortholog_one2many 1 retrogene
retro_acar_86,
Ailuropoda melanoleuca ENSAMEG00000010878 possible_ortholog 5 retrogenes
retro_amel_1046, retro_amel_1476, retro_amel_1601, retro_amel_280, retro_amel_461,
Bos taurus ENSBTAG00000015831 ortholog_one2one 5 retrogenes
retro_btau_145, retro_btau_1586, retro_btau_842, retro_btau_917, retro_btau_922,
Canis familiaris ENSCAFG00000015122 possible_ortholog 1 retrogene
retro_cfam_231,
Callithrix jacchus ENSCJAG00000014006 ortholog_one2one 7 retrogenes
retro_cjac_1628, retro_cjac_2814, retro_cjac_3192, retro_cjac_3906, retro_cjac_4134, retro_cjac_441, retro_cjac_642,
Cavia porcellus ENSCPOG00000015205 possible_ortholog 1 retrogene
retro_cpor_1478,
Equus caballus ENSECAG00000015258 possible_ortholog 1 retrogene
retro_ecab_745,
Felis catus ENSFCAG00000007518 possible_ortholog 6 retrogenes
retro_fcat_1190, retro_fcat_1213, retro_fcat_1716, retro_fcat_1848, retro_fcat_267, retro_fcat_831,
Homo sapiens ENSG00000105640 ortholog_one2one 11 retrogenes
retro_hsap_1053, retro_hsap_128, retro_hsap_135, retro_hsap_1610, retro_hsap_1961, retro_hsap_2254, retro_hsap_2676, retro_hsap_2776, retro_hsap_4129, retro_hsap_4734, retro_hsap_4776,
Gorilla gorilla ENSGGOG00000002870 ortholog_one2one 8 retrogenes
retro_ggor_1215, retro_ggor_1680, retro_ggor_1868, retro_ggor_1933, retro_ggor_195, retro_ggor_227, retro_ggor_2775, retro_ggor_2940,
Macropus eugenii ENSMEUG00000003228 ortholog_many2many 2 retrogenes
retro_meug_36, retro_meug_49,
Myotis lucifugus ENSMLUG00000006701 ortholog_one2one 4 retrogenes
retro_mluc_1671, retro_mluc_1893, retro_mluc_1978, retro_mluc_2191,
Macaca mulatta ENSMMUG00000028844 possible_ortholog 6 retrogenes
retro_mmul_1416, retro_mmul_1591, retro_mmul_2233, retro_mmul_2547, retro_mmul_292, retro_mmul_364,
Monodelphis domestica ENSMODG00000019167 ortholog_one2many 2 retrogenes
retro_mdom_349, retro_mdom_680,
Mustela putorius furo ENSMPUG00000015786 possible_ortholog 4 retrogenes
retro_mputfur_1007, retro_mputfur_1189, retro_mputfur_1574, retro_mputfur_457,
Mus musculus ENSMUSG00000045128 ortholog_one2one 8 retrogenes
retro_mmus_1606, retro_mmus_260, retro_mmus_2910, retro_mmus_2924, retro_mmus_326, retro_mmus_346, retro_mmus_937, retro_mmus_951,
Nomascus leucogenys ENSNLEG00000005889 ortholog_one2one 7 retrogenes
retro_nleu_1087, retro_nleu_1180, retro_nleu_1940, retro_nleu_2261, retro_nleu_2605, retro_nleu_2672, retro_nleu_680,
Otolemur garnettii ENSOGAG00000031828 ortholog_one2one 4 retrogenes
retro_ogar_1016, retro_ogar_1891, retro_ogar_2226, retro_ogar_2564,
Pan troglodytes ENSPTRG00000010686 ortholog_one2one 3 retrogenes
retro_ptro_1078, retro_ptro_1803, retro_ptro_27,
Pteropus vampyrus ENSPVAG00000017378 possible_ortholog 6 retrogenes
retro_pvam_1314, retro_pvam_133, retro_pvam_155, retro_pvam_200, retro_pvam_607, retro_pvam_828,
Rattus norvegicus ENSRNOG00000018795 ortholog_one2one 6 retrogenes
retro_rnor_108, retro_rnor_1655, retro_rnor_2279, retro_rnor_2362, retro_rnor_2821, retro_rnor_888,
Sarcophilus harrisii ENSSHAG00000000406 ortholog_one2many 3 retrogenes
retro_shar_435, retro_shar_474, retro_shar_706,
Sus scrofa ENSSSCG00000013889 possible_ortholog 2 retrogenes
retro_sscr_1103, retro_sscr_184,
Ictidomys tridecemlineatus ENSSTOG00000007788 ortholog_one2one 1 retrogene
retro_itri_694,
Tupaia belangeri ENSTBEG00000010488 possible_ortholog 4 retrogenes
retro_tbel_2865, retro_tbel_2925, retro_tbel_635, retro_tbel_919,
Tursiops truncatus ENSTTRG00000008977 possible_ortholog 2 retrogenes
retro_ttru_151, retro_ttru_508,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_482 79.10 100.00
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2. retro_pabe_487 81.46 85.23
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3. retro_pabe_1200 90.83 68.18
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4. retro_pabe_1319 68.97 64.20
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5. retro_pabe_1620 85.88 100.00
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6. retro_pabe_2239 83.05 100.00
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7. retro_pabe_2302 80.45 99.43
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8. retro_pabe_3680 57.71 98.86
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9. retro_pabe_3717 92.05 100.00
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10. retro_pabe_3802 80.18 61.36
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Download FASTA sequences of all ENSPPYG00000009725 retrocopies