Parental gene:

RPL18A, ENSAMEG00000010878

Aliases:None
Description:60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:G1LWI8]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192348.1:1284258..1287485(+)


>ENSAMEG00000010878
GCCATGAAGGCCTCGGGCACGCTGCGAGAGTACAAGGTGGTGGGGCGCTGCCTGCCCACCCCCAAGTGCCGCACTCCGCC
CCTGTATCGGATGCGAATCTTTGCACCTAATCATGTCGTTGCCAAGTCCCGCTTCTGGTACTTTGTGTCTCAGCTGAAGA
AGATGAAGAAGTCTTCGGGGGAAATTGTCTACTGTGGACAGGTGTTCGAGAAATCCCCCTTGCGGGTGAAGAACTTTGGC
ATCTGGCTGCGCTATGACTCTCGCAGCGGCACCCACAACATGTACCGAGAGTACCGGGACCTGACCACCGCGGGCGCCGT
CACCCAATGCTACCGAGACATGGGCGCACGACACCGTGCCCGGGCCCACTCGATCCAGGTCATGAAGGTGGAGGAGATTG
CTGCCAGCAAGTGCCGCCGGCCAGCGGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCACTGCCTCACCGGGTCCTG
CGTCGCCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003125 ortholog_one2one 1 retrogene
retro_acar_86,
Bos taurus ENSBTAG00000015831 possible_ortholog 5 retrogenes
retro_btau_145, retro_btau_1586, retro_btau_842, retro_btau_917, retro_btau_922,
Canis familiaris ENSCAFG00000015122 possible_ortholog 1 retrogene
retro_cfam_231,
Callithrix jacchus ENSCJAG00000014006 possible_ortholog 7 retrogenes
retro_cjac_1628, retro_cjac_2814, retro_cjac_3192, retro_cjac_3906, retro_cjac_4134, retro_cjac_441, retro_cjac_642,
Cavia porcellus ENSCPOG00000015205 possible_ortholog 1 retrogene
retro_cpor_1478,
Equus caballus ENSECAG00000015258 ortholog_one2one 1 retrogene
retro_ecab_745,
Gorilla gorilla ENSGGOG00000002870 possible_ortholog 8 retrogenes
retro_ggor_1215, retro_ggor_1680, retro_ggor_1868, retro_ggor_1933, retro_ggor_195, retro_ggor_227, retro_ggor_2775, retro_ggor_2940,
Macropus eugenii ENSMEUG00000003228 ortholog_one2many 2 retrogenes
retro_meug_36, retro_meug_49,
Macaca mulatta ENSMMUG00000028844 possible_ortholog 6 retrogenes
retro_mmul_1416, retro_mmul_1591, retro_mmul_2233, retro_mmul_2547, retro_mmul_292, retro_mmul_364,
Monodelphis domestica ENSMODG00000019167 ortholog_one2one 2 retrogenes
retro_mdom_349, retro_mdom_680,
Mustela putorius furo ENSMPUG00000015786 possible_ortholog 4 retrogenes
retro_mputfur_1007, retro_mputfur_1189, retro_mputfur_1574, retro_mputfur_457,
Pongo abelii ENSPPYG00000009725 possible_ortholog 10 retrogenes
retro_pabe_1200, retro_pabe_1319, retro_pabe_1620, retro_pabe_2239, retro_pabe_2302, retro_pabe_3680, retro_pabe_3717, retro_pabe_3802, retro_pabe_482, retro_pabe_487,
Pan troglodytes ENSPTRG00000010686 possible_ortholog 3 retrogenes
retro_ptro_1078, retro_ptro_1803, retro_ptro_27,
Sarcophilus harrisii ENSSHAG00000000406 ortholog_one2one 3 retrogenes
retro_shar_435, retro_shar_474, retro_shar_706,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_280 64.42 91.53
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2. retro_amel_461 68.33 67.80
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3. retro_amel_1046 66.85 98.87
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4. retro_amel_1476 62.78 100.00
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5. retro_amel_1601 67.74 52.54
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Download FASTA sequences of all ENSAMEG00000010878 retrocopies