RetrogeneDB - Parental gene ENSCJAG00000014006 details

Parental gene:	RPL18A, ENSCJAG00000014006
Aliases:	None
Description:	ribosomal protein L18a [Source:HGNC Symbol;Acc:10311]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	22:16899295..16902527(+)

                            
>ENSCJAG00000014006
ATGAAGGCTTCTGGCACACTACGAGAGTACAAGGTGGTGGGTCGCTGCCTGCCTACCCCCAAATGCCACACACCGCCCCT

CTACCGCATGCGAATCTTTGCGCCTAATCATGTTGTTGCCAAGTCCCGCTTCTGGTACTTCGTGTCTCAGTTGAAGAAGA

TGAAGAAGTCTTCAGGGGAGATTGTCTACTGCGGGCAGGTGTTCGAGAAGTCCCCCCTGCGGGTGAAGAACTTCGGTATC

TGGCTGCGCTATGACTCCAGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGGGCCGTCAC

CCAGTGCTACAGAGACATGGGCGCCCGGCACCGCGCCCGGGCCCACTCCATCCAGATCATGAAAGTGGAGGAGATCGCAG

CCAGCAAGTGCCGCCGGCCGGCCGTCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCGCTGCCCCACCGCGTCCTGCGC

CGTCAGCACAAGCCACGCTTCACCACCAAGAGGCCCAACACTTTCTTCTAG

Library	Parental gene expression (RPM)
SRP051959_colon	52 .83 RPM
SRP051959_heart	42 .96 RPM
SRP051959_kidney	41 .82 RPM
SRP051959_liver	54 .15 RPM
SRP051959_lung	54 .28 RPM
SRP051959_lymph_node	72 .62 RPM
SRP051959_skeletal_muscle	74 .10 RPM
SRP051959_spleen	59 .81 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000003125	ortholog_one2many	1 retrogene	retro_acar_86,
Ailuropoda melanoleuca	ENSAMEG00000010878	possible_ortholog	5 retrogenes	retro_amel_1046, retro_amel_1476, retro_amel_1601, retro_amel_280, retro_amel_461,
Bos taurus	ENSBTAG00000015831	ortholog_one2one	5 retrogenes	retro_btau_145, retro_btau_1586, retro_btau_842, retro_btau_917, retro_btau_922,
Canis familiaris	ENSCAFG00000015122	possible_ortholog	1 retrogene	retro_cfam_231,
Cavia porcellus	ENSCPOG00000015205	possible_ortholog	1 retrogene	retro_cpor_1478,
Equus caballus	ENSECAG00000015258	possible_ortholog	1 retrogene	retro_ecab_745,
Felis catus	ENSFCAG00000007518	possible_ortholog	6 retrogenes	retro_fcat_1190, retro_fcat_1213, retro_fcat_1716, retro_fcat_1848, retro_fcat_267, retro_fcat_831,
Homo sapiens	ENSG00000105640	ortholog_one2one	11 retrogenes	retro_hsap_1053, retro_hsap_128, retro_hsap_135, retro_hsap_1610, retro_hsap_1961, retro_hsap_2254, retro_hsap_2676, retro_hsap_2776, retro_hsap_4129, retro_hsap_4734, retro_hsap_4776,
Gorilla gorilla	ENSGGOG00000002870	ortholog_one2one	8 retrogenes	retro_ggor_1215, retro_ggor_1680, retro_ggor_1868, retro_ggor_1933, retro_ggor_195, retro_ggor_227, retro_ggor_2775, retro_ggor_2940,
Macropus eugenii	ENSMEUG00000003228	ortholog_many2many	2 retrogenes	retro_meug_36, retro_meug_49,
Myotis lucifugus	ENSMLUG00000006701	ortholog_one2one	4 retrogenes	retro_mluc_1671, retro_mluc_1893, retro_mluc_1978, retro_mluc_2191,
Macaca mulatta	ENSMMUG00000028844	possible_ortholog	6 retrogenes	retro_mmul_1416, retro_mmul_1591, retro_mmul_2233, retro_mmul_2547, retro_mmul_292, retro_mmul_364,
Monodelphis domestica	ENSMODG00000019167	ortholog_one2many	2 retrogenes	retro_mdom_349, retro_mdom_680,
Mustela putorius furo	ENSMPUG00000015786	possible_ortholog	4 retrogenes	retro_mputfur_1007, retro_mputfur_1189, retro_mputfur_1574, retro_mputfur_457,
Mus musculus	ENSMUSG00000045128	ortholog_one2one	8 retrogenes	retro_mmus_1606, retro_mmus_260, retro_mmus_2910, retro_mmus_2924, retro_mmus_326, retro_mmus_346, retro_mmus_937, retro_mmus_951,
Nomascus leucogenys	ENSNLEG00000005889	ortholog_one2one	7 retrogenes	retro_nleu_1087, retro_nleu_1180, retro_nleu_1940, retro_nleu_2261, retro_nleu_2605, retro_nleu_2672, retro_nleu_680,
Otolemur garnettii	ENSOGAG00000031828	ortholog_one2one	4 retrogenes	retro_ogar_1016, retro_ogar_1891, retro_ogar_2226, retro_ogar_2564,
Pongo abelii	ENSPPYG00000009725	ortholog_one2one	10 retrogenes	retro_pabe_1200, retro_pabe_1319, retro_pabe_1620, retro_pabe_2239, retro_pabe_2302, retro_pabe_3680, retro_pabe_3717, retro_pabe_3802, retro_pabe_482, retro_pabe_487,
Pan troglodytes	ENSPTRG00000010686	ortholog_one2one	3 retrogenes	retro_ptro_1078, retro_ptro_1803, retro_ptro_27,
Pteropus vampyrus	ENSPVAG00000017378	possible_ortholog	6 retrogenes	retro_pvam_1314, retro_pvam_133, retro_pvam_155, retro_pvam_200, retro_pvam_607, retro_pvam_828,
Rattus norvegicus	ENSRNOG00000018795	ortholog_one2one	6 retrogenes	retro_rnor_108, retro_rnor_1655, retro_rnor_2279, retro_rnor_2362, retro_rnor_2821, retro_rnor_888,
Sarcophilus harrisii	ENSSHAG00000000406	ortholog_one2many	3 retrogenes	retro_shar_435, retro_shar_474, retro_shar_706,
Sus scrofa	ENSSSCG00000013889	possible_ortholog	2 retrogenes	retro_sscr_1103, retro_sscr_184,
Ictidomys tridecemlineatus	ENSSTOG00000007788	ortholog_one2one	1 retrogene	retro_itri_694,
Tupaia belangeri	ENSTBEG00000010488	possible_ortholog	4 retrogenes	retro_tbel_2865, retro_tbel_2925, retro_tbel_635, retro_tbel_919,
Tursiops truncatus	ENSTTRG00000008977	possible_ortholog	2 retrogenes	retro_ttru_151, retro_ttru_508,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_441	87.01	87.50	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_642	57.48	70.45	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_1628	71.23	81.25	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_2814	78.02	51.14	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_3192	83.15	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_3906	76.14	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_4134	75.47	59.09	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000014006 retrocopies

Parental gene:

RPL18A, ENSCJAG00000014006