Parental gene:

BTF3L4, ENSPPYG00000001353

Aliases:None
Description:Transcription factor BTF3 homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5RC59]
Organism:Orangutan (Pongo abelii)
Coordinates:1:177661846..177693360(-)


>ENSPPYG00000001353
ATGCCGCGCGGCCACCTGCACCTGCCGCTACTAGCACTAGCGGGATGCGCAAAGCAGGCGGGGCGTTGGAGTTTAGATGT
GCGCTCCCGGGATAGGCTGCCCCGGAGAGGGAGAGGCGGGGTCGGCTGTATCACGTGGATCTGCTCCCGCCGCCGCCACC
GCCGTGGTCGTCTTTCTCTGTCTCGGCTGAGGCAGCCATCTTGCTCTTGCCGCGTGCTGGTGTTGGAGGACCCTCCGCGC
TTCAGATTTACCAACAGCATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCCGGATAGGGGGCAAGGGTACAGC
TCGCAGAAAGAAGAAGGTGGTACATAGAACAGCCACAGCTGATGACAAAAAGCTTCAGAGTTCTCTAAAAAAACTGGCTG
TGAATAATATAGCTGGTATTGAAGAGGTGAACATGATTAAAGATGATGGGACAGTTATTCATTTCAACAATCCCAAAGTC
CAAGCTTCCCTTTCTGCTAATACCTTTGCAATTACTGGTCATGCAGAAGCCAAACCAATCACAGAAATGCTTCCTGGAAT
ATTAAGTCAGCTTGGTGCTGACAGTTTAACAAGCCTTAGGAAGTTAGCTGAACAGTTCCCACGGCAAGTCTTGGACAGTA
AAGCACCAAAACCAGAAGACATTGATGAGGAAGATGATGATGTTCCAGATCTTGTAGAAAATTTTGATGAGGCATCAAAG
AATGAAGCTAACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 12 .50 RPM
SRP007412_cerebellum 17 .63 RPM
SRP007412_heart 11 .29 RPM
SRP007412_kidney 13 .09 RPM
SRP007412_liver 20 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011025 possible_ortholog 1 retrogene
retro_btau_1030,
Canis familiaris ENSCAFG00000003782 possible_ortholog 2 retrogenes
retro_cfam_2135, retro_cfam_938,
Callithrix jacchus ENSCJAG00000021582 ortholog_one2many 4 retrogenes
retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus ENSCPOG00000004006 ortholog_one2many 1 retrogene
retro_cpor_908,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Dasypus novemcinctus ENSDNOG00000003181 ortholog_one2many 4 retrogenes
retro_dnov_1690, retro_dnov_1928, retro_dnov_2672, retro_dnov_921,
Erinaceus europaeus ENSEEUG00000004502 ortholog_one2one 3 retrogenes
retro_eeur_215, retro_eeur_447, retro_eeur_456,
Echinops telfairi ENSETEG00000011923 ortholog_one2many 11 retrogenes
retro_etel_1017, retro_etel_1167, retro_etel_1207, retro_etel_1409, retro_etel_1990, retro_etel_2113, retro_etel_2203, retro_etel_291, retro_etel_663, retro_etel_804, retro_etel_953,
Homo sapiens ENSG00000134717 ortholog_one2one 3 retrogenes
retro_hsap_2173, retro_hsap_2514, retro_hsap_3669,
Loxodonta africana ENSLAFG00000016124 ortholog_one2many 3 retrogenes
retro_lafr_206, retro_lafr_769, retro_lafr_947,
Macropus eugenii ENSMEUG00000006135 ortholog_one2many 10 retrogenes
retro_meug_1114, retro_meug_1164, retro_meug_1333, retro_meug_1395, retro_meug_1512, retro_meug_1663, retro_meug_2008, retro_meug_298, retro_meug_903, retro_meug_966,
Microcebus murinus ENSMICG00000002807 ortholog_one2one 1 retrogene
retro_mmur_804,
Myotis lucifugus ENSMLUG00000016884 possible_ortholog 1 retrogene
retro_mluc_912,
Macaca mulatta ENSMMUG00000003636 ortholog_one2many 1 retrogene
retro_mmul_59,
Monodelphis domestica ENSMODG00000000770 ortholog_many2many 2 retrogenes
retro_mdom_33, retro_mdom_992,
Mustela putorius furo ENSMPUG00000006966 possible_ortholog 2 retrogenes
retro_mputfur_1444, retro_mputfur_924,
Mus musculus ENSMUSG00000028568 ortholog_one2many 2 retrogenes
retro_mmus_1134, retro_mmus_2743,
Nomascus leucogenys ENSNLEG00000016041 ortholog_one2one 2 retrogenes
retro_nleu_1439, retro_nleu_521,
Oryctolagus cuniculus ENSOCUG00000001517 possible_ortholog 3 retrogenes
retro_ocun_1001, retro_ocun_1412, retro_ocun_1912,
Otolemur garnettii ENSOGAG00000030256 possible_ortholog 2 retrogenes
retro_ogar_2759, retro_ogar_570,
Ochotona princeps ENSOPRG00000013335 possible_ortholog 2 retrogenes
retro_opri_719, retro_opri_974,
Procavia capensis ENSPCAG00000006428 ortholog_one2many 3 retrogenes
retro_pcap_129, retro_pcap_307, retro_pcap_373,
Pongo abelii ENSPPYG00000029576 within_species_paralog 14 retrogenes
retro_pabe_1154, retro_pabe_1477, retro_pabe_180, retro_pabe_1885, retro_pabe_1956, retro_pabe_2207, retro_pabe_2458, retro_pabe_2918, retro_pabe_2919, retro_pabe_2932, retro_pabe_3329, retro_pabe_3484, retro_pabe_558, retro_pabe_649,
Pan troglodytes ENSPTRG00000000735 ortholog_one2one 3 retrogenes
retro_ptro_1459, retro_ptro_1658, retro_ptro_2489,
Rattus norvegicus ENSRNOG00000008512 ortholog_one2many 8 retrogenes
retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,
Sorex araneus ENSSARG00000003173 possible_ortholog 2 retrogenes
retro_sara_680, retro_sara_690,
Ictidomys tridecemlineatus ENSSTOG00000006129 possible_ortholog 6 retrogenes
retro_itri_1309, retro_itri_402, retro_itri_459, retro_itri_541, retro_itri_701, retro_itri_810,
Tupaia belangeri ENSTBEG00000013307 ortholog_one2one 30 retrogenes
retro_tbel_1050, retro_tbel_1052, retro_tbel_1178, retro_tbel_1595, retro_tbel_1642, retro_tbel_1785, retro_tbel_1883, retro_tbel_1924, retro_tbel_2245, retro_tbel_2290, retro_tbel_2532, retro_tbel_2979, retro_tbel_3092, retro_tbel_3100, retro_tbel_3340, retro_tbel_3469, retro_tbel_3483, retro_tbel_3520, retro_tbel_3583, retro_tbel_3598, retro_tbel_3986, retro_tbel_4045, retro_tbel_4278, retro_tbel_4283, retro_tbel_4563, retro_tbel_4623, retro_tbel_539, retro_tbel_701, retro_tbel_98, retro_tbel_991,
Tarsius syrichta ENSTSYG00000013635 possible_ortholog 3 retrogenes
retro_tsyr_1576, retro_tsyr_1822, retro_tsyr_2045,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1850 84.69 78.28
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2. retro_pabe_3010 85.25 74.59
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Download FASTA sequences of all ENSPPYG00000001353 retrocopies