Parental gene:

BTF3L4, ENSG00000134717

Aliases:None
Description:basic transcription factor 3-like 4 [Source:HGNC Symbol;Acc:30547]
Organism:Human (Homo sapiens)
Coordinates:1:52521796..52556388(+)


>ENSG00000134717
ATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCCGGATAGGGGGCAAGGGTACAGCTCGCAGAAAGAAGAAGGT
GGTACATAGAACAGCCACAGCTGATGACAAAAAGCTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTA
TTGAAGAGGTGAACATGATTAAAGATGATGGGACAGTTATTCATTTCAACAATCCCAAAGTCCAAGCTTCCCTTTCTGCT
AATACCTTTGCAATTACTGGTCATGCAGAAGCCAAACCAATCACAGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGC
TGACAGTTTAACAAGCCTTAGGAAGTTAGCTGAACAGTTCCCACGGCAAGTCTTGGACAGTAAAGCACCAAAACCAGAAG
ACATTGATGAGGAAGATGATGATGTTCCAGATCTTGTAGAAAATTTTGATGAGGCATCAAAGAATGAAGCTAACTAA

Library Parental gene expression (RPM)
bodymap2_adipose 56 .29 RPM
bodymap2_adrenal 50 .07 RPM
bodymap2_brain 78 .50 RPM
bodymap2_breast 85 .27 RPM
bodymap2_colon 45 .63 RPM
bodymap2_heart 32 .29 RPM
bodymap2_kidney 47 .79 RPM
bodymap2_liver 19 .03 RPM
bodymap2_lung 37 .71 RPM
bodymap2_lymph_node 34 .37 RPM
bodymap2_ovary 94 .11 RPM
bodymap2_prostate 58 .25 RPM
bodymap2_skeletal_muscle 66 .13 RPM
bodymap2_testis 64 .63 RPM
bodymap2_thyroid 59 .51 RPM
bodymap2_white_blood_cells 68 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000021582 ortholog_one2many 4 retrogenes
retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus ENSCPOG00000004006 ortholog_one2one 1 retrogene
retro_cpor_908,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Dasypus novemcinctus ENSDNOG00000003181 ortholog_one2one 4 retrogenes
retro_dnov_1690, retro_dnov_1928, retro_dnov_2672, retro_dnov_921,
Erinaceus europaeus ENSEEUG00000004502 ortholog_one2one 3 retrogenes
retro_eeur_215, retro_eeur_447, retro_eeur_456,
Echinops telfairi ENSETEG00000011923 ortholog_one2one 11 retrogenes
retro_etel_1017, retro_etel_1167, retro_etel_1207, retro_etel_1409, retro_etel_1990, retro_etel_2113, retro_etel_2203, retro_etel_291, retro_etel_663, retro_etel_804, retro_etel_953,
Homo sapiens ENSG00000145741 within_species_paralog 11 retrogenes
retro_hsap_1215, retro_hsap_1396, retro_hsap_2259, retro_hsap_2525, retro_hsap_2819, retro_hsap_2964, retro_hsap_3533, retro_hsap_3551, retro_hsap_3972, retro_hsap_4270, retro_hsap_625,
Loxodonta africana ENSLAFG00000016124 ortholog_one2one 3 retrogenes
retro_lafr_206, retro_lafr_769, retro_lafr_947,
Macropus eugenii ENSMEUG00000006135 ortholog_one2one 10 retrogenes
retro_meug_1114, retro_meug_1164, retro_meug_1333, retro_meug_1395, retro_meug_1512, retro_meug_1663, retro_meug_2008, retro_meug_298, retro_meug_903, retro_meug_966,
Microcebus murinus ENSMICG00000002807 ortholog_one2one 1 retrogene
retro_mmur_804,
Myotis lucifugus ENSMLUG00000016884 possible_ortholog 1 retrogene
retro_mluc_912,
Macaca mulatta ENSMMUG00000003636 ortholog_one2many 1 retrogene
retro_mmul_59,
Monodelphis domestica ENSMODG00000000770 ortholog_one2many 2 retrogenes
retro_mdom_33, retro_mdom_992,
Mus musculus ENSMUSG00000028568 ortholog_one2one 2 retrogenes
retro_mmus_1134, retro_mmus_2743,
Nomascus leucogenys ENSNLEG00000016041 ortholog_one2one 2 retrogenes
retro_nleu_1439, retro_nleu_521,
Oryctolagus cuniculus ENSOCUG00000001517 possible_ortholog 3 retrogenes
retro_ocun_1001, retro_ocun_1412, retro_ocun_1912,
Procavia capensis ENSPCAG00000006428 ortholog_one2one 3 retrogenes
retro_pcap_129, retro_pcap_307, retro_pcap_373,
Pongo abelii ENSPPYG00000001353 ortholog_one2one 2 retrogenes
retro_pabe_1850, retro_pabe_3010,
Pan troglodytes ENSPTRG00000000735 ortholog_one2one 3 retrogenes
retro_ptro_1459, retro_ptro_1658, retro_ptro_2489,
Rattus norvegicus ENSRNOG00000008512 ortholog_one2one 8 retrogenes
retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,
Tupaia belangeri ENSTBEG00000013307 ortholog_one2one 30 retrogenes
retro_tbel_1050, retro_tbel_1052, retro_tbel_1178, retro_tbel_1595, retro_tbel_1642, retro_tbel_1785, retro_tbel_1883, retro_tbel_1924, retro_tbel_2245, retro_tbel_2290, retro_tbel_2532, retro_tbel_2979, retro_tbel_3092, retro_tbel_3100, retro_tbel_3340, retro_tbel_3469, retro_tbel_3483, retro_tbel_3520, retro_tbel_3583, retro_tbel_3598, retro_tbel_3986, retro_tbel_4045, retro_tbel_4278, retro_tbel_4283, retro_tbel_4563, retro_tbel_4623, retro_tbel_539, retro_tbel_701, retro_tbel_98, retro_tbel_991,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2173 96.23 100.00
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2. retro_hsap_2514 94.90 99.37
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3. retro_hsap_3669 80.38 99.37
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Download FASTA sequences of all ENSG00000134717 retrocopies