Parental gene:

ENSOCUG00000022490

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:37279306..37292193(+)


>ENSOCUG00000022490
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCATGGCAAGGAAGTTGGTAG
TATCATCGGAAAGAAAGGAGAATCTGTTAAGAAGATGCGCGAGGAGAGTGGTGCACGTATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATTTTCAAAGCATTTGCTATGATCATTGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACCAATAGCACAGCTGCCAGTAGACCTCCGGTTACCTTGAGGCTGGTGGTTCCTGCTAG
TCAGTGTGGCTCTCTCATTGGAAAAGGTGGTTGCAAGATCAAGGAAATAAGAGAGAGTACAGGGGCTCAGGTGCAGGTGG
CAGGGGATATGCTCCCCAACTCAACTGAGCGGGCCATCACTATTGCTGGCATCCCGCAATCCATCATTGAGTGTGTCAAA
CAGATCTGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCTCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCGGTCATCTTTGCAGGTGGTCAGCAGACTCCAGTGTGCTGTTCCCCAGACTCTCAACCTCAGAAACACTGTT
GGCATGAACTTGAACAAACACCAACTCGGGCCTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGATTTGACCAAG
CTGCACCAGTTGGCAATGCAACAGTCTCATTTTCCCATGACCCATGGCAACACCGGATTCAGTGGCATTGAATCCAGCTC
TCCAGAGGTGAAAGGCTATTGGGCAGGTCTGGATGCATCTGCTCAGACTACTTCTCATGAACTCACCATTCCAAATGATT
TGATTGGCTGCATAATCGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATCAAAATTGCG
AACCCAGTAGAAGGATCTACTGATAGGCAGGTTACCATCACCGGATCTGCTGCCAGCATCAGCCTGGCTCAATACCTAAT
CAATGTCAGCAGGAGAAGTAACCAGACTGCAATAAATTTGCAT

Library Parental gene expression (RPM)
SRP017611_brain 82 .67 RPM
SRP017611_kidney 104 .60 RPM
SRP017611_liver 61 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020757 possible_ortholog 1 retrogene
retro_btau_175,
Canis familiaris ENSCAFG00000006821 possible_ortholog 1 retrogene
retro_cfam_54,
Callithrix jacchus ENSCJAG00000018590 possible_ortholog 2 retrogenes
retro_cjac_3253, retro_cjac_754,
Cavia porcellus ENSCPOG00000000967 possible_ortholog 2 retrogenes
retro_cpor_193, retro_cpor_97,
Dasypus novemcinctus ENSDNOG00000008688 possible_ortholog 6 retrogenes
retro_dnov_1146, retro_dnov_1399, retro_dnov_1672, retro_dnov_1823, retro_dnov_2434, retro_dnov_452,
Equus caballus ENSECAG00000022389 possible_ortholog 1 retrogene
retro_ecab_67,
Erinaceus europaeus ENSEEUG00000001077 possible_ortholog 2 retrogenes
retro_eeur_218, retro_eeur_655,
Echinops telfairi ENSETEG00000014741 possible_ortholog 3 retrogenes
retro_etel_1170, retro_etel_2108, retro_etel_840,
Homo sapiens ENSG00000197111 possible_ortholog 2 retrogenes
retro_hsap_4077, retro_hsap_83,
Gorilla gorilla ENSGGOG00000012613 possible_ortholog 2 retrogenes
retro_ggor_212, retro_ggor_2734,
Macropus eugenii ENSMEUG00000001887 possible_ortholog 7 retrogenes
retro_meug_1143, retro_meug_1988, retro_meug_432, retro_meug_526, retro_meug_618, retro_meug_828, retro_meug_964,
Microcebus murinus ENSMICG00000011651 possible_ortholog 2 retrogenes
retro_mmur_1226, retro_mmur_1228,
Myotis lucifugus ENSMLUG00000009971 possible_ortholog 3 retrogenes
retro_mluc_2199, retro_mluc_314, retro_mluc_571,
Macaca mulatta ENSMMUG00000006608 possible_ortholog 2 retrogenes
retro_mmul_1263, retro_mmul_1994,
Mus musculus ENSMUSG00000056851 possible_ortholog 1 retrogene
retro_mmus_274,
Nomascus leucogenys ENSNLEG00000017693 possible_ortholog 1 retrogene
retro_nleu_10,
Oryctolagus cuniculus ENSOCUG00000002696 within_species_paralog 1 retrogene
retro_ocun_1257,
Ochotona princeps ENSOPRG00000004680 possible_ortholog 5 retrogenes
retro_opri_1126, retro_opri_284, retro_opri_313, retro_opri_742, retro_opri_789,
Pongo abelii ENSPPYG00000004581 possible_ortholog 2 retrogenes
retro_pabe_3346, retro_pabe_92,
Pan troglodytes ENSPTRG00000005018 possible_ortholog 1 retrogene
retro_ptro_113,
Pteropus vampyrus ENSPVAG00000012284 possible_ortholog 3 retrogenes
retro_pvam_1168, retro_pvam_1369, retro_pvam_868,
Rattus norvegicus ENSRNOG00000036852 possible_ortholog 2 retrogenes
retro_rnor_1238, retro_rnor_2088,
Sus scrofa ENSSSCG00000000274 possible_ortholog 1 retrogene
retro_sscr_61,
Ictidomys tridecemlineatus ENSSTOG00000003635 possible_ortholog 2 retrogenes
retro_itri_1522, retro_itri_557,
Vicugna pacos ENSVPAG00000000406 ortholog_one2many 1 retrogene
retro_vpac_471,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_10 81.18 98.34
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2. retro_ocun_898 98.98 54.57
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3. retro_ocun_1622 96.43 54.29
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Download FASTA sequences of all ENSOCUG00000022490 retrocopies