Parental gene: | PCBP1, ENSDNOG00000008688 |
| Aliases: | None |
| Description: | poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_6518:131389..150078(+) |
>ENSDNOG00000008688
ATGGACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGGCTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATCGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGGGAGGAAAGTGGTGCACGTATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACTTTGGCTGGACCCACTAATGCCATCTTTAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACTAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGAGGCTGGTGGTCCCTGCTAG
TCAATGTGGCTCTCTCATTGGGAAAGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTCCAGGTGG
CAGGGGATATGCTCCCCAACTCAACTGAGCGGGCCATCACTATCGCTGGCATTCCGCAATCCATCATTGAGTGTGTCAAA
CAGATCTGCGTGGTCATGTTGGAGACTCTCTCCCAGTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCGGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCT
CCATGTGCCTCAACGACCTGGAGGGACCACCTCTAGAGGCTTATACCATTCAAGGACAGTATGCCATTCCACAGCCAGAT
TTGACCAAGCTGCACCAGTTGGCGATGCAACAGTCTCATTTTCCTATGACGCACGGCAACACCGGATTCAGTGGCATTGA
ATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGCAGGTTTGGATGCATCTGCTCAGACTACTTCTCATGAACTCACCATTC
CAAATGATTTGATTGGCTGCATAATCGGGCGTCAAGGCGCCAAAATCAATGAGATCCGTCAGATGTCTGGGGCGCAGATC
AAAATTGCGAACCCAGTGGAAGGATCTACTGATAGGCAGGTTACCATCACTGGATCTGCTGCCAGCATTAGTCTGGCACA
GTATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 293 .06 RPM |
| SRP012922_cerebellum | 275 .08 RPM |
| SRP012922_heart | 145 .48 RPM |
| SRP012922_kidney | 473 .12 RPM |
| SRP012922_liver | 279 .74 RPM |
| SRP012922_lung | 371 .27 RPM |
| SRP012922_quadricep_muscle | 231 .76 RPM |
| SRP012922_spleen | 350 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020757 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000006821 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018590 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000000967 | possible_ortholog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000000026 | other_paralog | 4 retrogenes | |
| Equus caballus | ENSECAG00000022389 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000014741 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000197111 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012613 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000011651 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009971 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000006608 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000056851 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017693 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000022490 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000004581 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000005018 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000012284 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000036852 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000000274 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000003635 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_452 | 89.50 | 58.79 | Please wait, loading  |
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| 2. | retro_dnov_1146 | 73.71 | 51.92 | Please wait, loading |
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| 3. | retro_dnov_1399 | 93.12 | 59.07 | Please wait, loading |
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| 4. | retro_dnov_1672 | 80.18 | 59.07 | Please wait, loading |
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| 5. | retro_dnov_1823 | 70.27 | 98.63 | Please wait, loading |
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| 6. | retro_dnov_2434 | 79.90 | 52.75 | Please wait, loading |
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Download FASTA sequences of all ENSDNOG00000008688 retrocopies