Parental gene:

MCTS1, ENSOCUG00000014315

Aliases:None
Description:malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:X:95030900..95038628(+)


>ENSOCUG00000014315
TCATTTGGCAGATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACCTCAGTAATTAAGGGTATTAAGAA
CCAGTTGATAGATCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTTC
GATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTACTATTTTTTAGACAAAGAGAAGGGCCTTTTTATCCA
ACCCTAAGGTTGCTTCACAAATATCCTTTTATCCTGCCACACCAGCAAGTTGATAAAGGAGCCATCAAATTTGTACTCAG
TGGAGCAAATATCATGTGTCCGGGCTTAACTTCTCCAGGAGCTAAGCTTTACCCTGCAGCAGTAGATACCATTGTTGCAA
TTATGGCTGAAGGGAAACAGCATGCTCTGTGTGTTGGAGTCATGAAGATGTCTGCAGAAGACATCGAGAAAGTCAACAAA
GGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACATATAAATAA

Library Parental gene expression (RPM)
SRP017611_brain 3 .53 RPM
SRP017611_kidney 3 .04 RPM
SRP017611_liver 1 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034992 possible_ortholog 1 retrogene
retro_btau_116,
Canis familiaris ENSCAFG00000018545 possible_ortholog 1 retrogene
retro_cfam_94,
Cavia porcellus ENSCPOG00000005502 ortholog_one2many 1 retrogene
retro_cpor_1411,
Erinaceus europaeus ENSEEUG00000007258 ortholog_one2one 1 retrogene
retro_eeur_197,
Echinops telfairi ENSETEG00000015462 ortholog_one2one 1 retrogene
retro_etel_19,
Felis catus ENSFCAG00000008448 possible_ortholog 2 retrogenes
retro_fcat_1009, retro_fcat_310,
Homo sapiens ENSG00000232119 ortholog_one2one 1 retrogene
retro_hsap_2422,
Gorilla gorilla ENSGGOG00000009420 ortholog_one2one 1 retrogene
retro_ggor_1507,
Macropus eugenii ENSMEUG00000014328 possible_ortholog 1 retrogene
retro_meug_1518,
Myotis lucifugus ENSMLUG00000015101 ortholog_one2one 1 retrogene
retro_mluc_16,
Macaca mulatta ENSMMUG00000009043 possible_ortholog 1 retrogene
retro_mmul_626,
Monodelphis domestica ENSMODG00000010354 ortholog_one2many 1 retrogene
retro_mdom_203,
Mustela putorius furo ENSMPUG00000001407 possible_ortholog 1 retrogene
retro_mputfur_98,
Mus musculus ENSMUSG00000000355 possible_ortholog 3 retrogenes
retro_mmus_2504, retro_mmus_2505, retro_mmus_69,
Nomascus leucogenys ENSNLEG00000015021 possible_ortholog 1 retrogene
retro_nleu_2442,
Pongo abelii ENSPPYG00000020687 possible_ortholog 2 retrogenes
retro_pabe_1786, retro_pabe_1833,
Pan troglodytes ENSPTRG00000022241 ortholog_one2one 1 retrogene
retro_ptro_1396,
Pteropus vampyrus ENSPVAG00000013249 ortholog_one2one 3 retrogenes
retro_pvam_1323, retro_pvam_645, retro_pvam_867,
Rattus norvegicus ENSRNOG00000002563 ortholog_one2one 2 retrogenes
retro_rnor_1841, retro_rnor_957,
Ictidomys tridecemlineatus ENSSTOG00000011496 possible_ortholog 2 retrogenes
retro_itri_1136, retro_itri_1468,
Tupaia belangeri ENSTBEG00000010666 ortholog_one2one 2 retrogenes
retro_tbel_1485, retro_tbel_4265,
Tarsius syrichta ENSTSYG00000001440 ortholog_one2one 1 retrogene
retro_tsyr_55,
Tursiops truncatus ENSTTRG00000007208 ortholog_one2one 1 retrogene
retro_ttru_1587,
Vicugna pacos ENSVPAG00000001801 possible_ortholog 1 retrogene
retro_vpac_138,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_212 96.67 99.45
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Download FASTA sequences of all ENSOCUG00000014315 retrocopies