Parental gene:

Mcts1, ENSRNOG00000002563

Aliases:None
Description:Malignant T-cell-amplified sequence 1 [Source:UniProtKB/Swiss-Prot;Acc:Q4G009]
Organism:Rat (Rattus norvegicus)
Coordinates:X:124979247..124990620(+)


>ENSRNOG00000002563
ATGGGCAAAGGAAGATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACCTCGGTTATTAAGGGTATTAA
AAATCAATTGCTAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTGAAAATTG
TCCGATGCCATGAACACATAGAAATCCTTACAGTAAATGGAGAGTTACTGTTTTTTAGACAAAGAGAAGGGCCTTTTTAT
CCAACCTTAAGATTACTTCATAAATATCCTTTTATCTTGCCACATCAGCAGGTTGATAAAGGAGCCATCAAATTTGTACT
CAGTGGAGCAAATATCATGTGTCCCGGCTTAACGTCTCCTGGAGCTAAGCTTTATCCTGCTGCAGTAGATACTATTGTTG
CAATCATGGCAGAAGGAAAACAACATGCTTTATGTGTGGGCGTCATGAAGATGTCTGCAGAAGATATTGAGAAAGTCAAC
AAAGGAATTGGCATTGAAAATATCCATTATCTAAATGATGGGCTGTGGCATATGAAGACATATAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 18 .05 RPM
SRP017611_kidney 15 .70 RPM
SRP017611_liver 14 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005502 ortholog_one2one 1 retrogene
retro_cpor_1411,
Erinaceus europaeus ENSEEUG00000007258 ortholog_one2one 1 retrogene
retro_eeur_197,
Echinops telfairi ENSETEG00000015462 ortholog_one2one 1 retrogene
retro_etel_19,
Homo sapiens ENSG00000232119 ortholog_one2one 1 retrogene
retro_hsap_2422,
Gorilla gorilla ENSGGOG00000009420 ortholog_one2one 1 retrogene
retro_ggor_1507,
Myotis lucifugus ENSMLUG00000015101 ortholog_one2one 1 retrogene
retro_mluc_16,
Monodelphis domestica ENSMODG00000010354 ortholog_one2one 1 retrogene
retro_mdom_203,
Mus musculus ENSMUSG00000000355 possible_ortholog 3 retrogenes
retro_mmus_2504, retro_mmus_2505, retro_mmus_69,
Oryctolagus cuniculus ENSOCUG00000014315 ortholog_one2one 1 retrogene
retro_ocun_212,
Pan troglodytes ENSPTRG00000022241 ortholog_one2one 1 retrogene
retro_ptro_1396,
Pteropus vampyrus ENSPVAG00000013249 ortholog_one2one 3 retrogenes
retro_pvam_1323, retro_pvam_645, retro_pvam_867,
Ictidomys tridecemlineatus ENSSTOG00000011496 possible_ortholog 2 retrogenes
retro_itri_1136, retro_itri_1468,
Tupaia belangeri ENSTBEG00000010666 ortholog_one2one 2 retrogenes
retro_tbel_1485, retro_tbel_4265,
Tarsius syrichta ENSTSYG00000001440 ortholog_one2one 1 retrogene
retro_tsyr_55,
Tursiops truncatus ENSTTRG00000007208 ortholog_one2one 1 retrogene
retro_ttru_1587,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_957 83.80 97.80
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2. retro_rnor_1841 93.26 97.80
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Download FASTA sequences of all ENSRNOG00000002563 retrocopies