Parental gene:

MCTS1, ENSPPYG00000020687

Aliases:None
Description:malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357]
Organism:Orangutan (Pongo abelii)
Coordinates:X:119632763..119641104(+)


>ENSPPYG00000020687
ATGTTCAAGAAATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACTTCAGTTATTAAGGGTATTAAGAA
TCAATTGATAGAGCAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTCC
GATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTACTCTTTTTTAGACAAAGAGAAGGGCCTTTTTATCCA
ACCCTAAGATTACTTCACAAATATCCTTTTATCCTGCCACACCAGCAGGTTGATAAAGGAGCCATCAAATTTGTACTCAG
TGGAGCAAATATCATGTGTCCAGGCTTAACTTCTCCTGGAGCTAAGCTTTACCCTGCTGCAGTAGATACCGTTGTTGCTA
TCATGGCAGAAGGAAAACAGCATGCTCTATGTGTTGGAGTCATGAAGATGTCTGCAGAAGACATTGAGAAAGTCAACAAA
GGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACATATAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 8 .68 RPM
SRP007412_cerebellum 6 .32 RPM
SRP007412_heart 5 .60 RPM
SRP007412_kidney 7 .92 RPM
SRP007412_liver 11 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034992 possible_ortholog 1 retrogene
retro_btau_116,
Canis familiaris ENSCAFG00000018545 possible_ortholog 1 retrogene
retro_cfam_94,
Echinops telfairi ENSETEG00000015462 possible_ortholog 1 retrogene
retro_etel_19,
Felis catus ENSFCAG00000008448 ortholog_one2one 2 retrogenes
retro_fcat_1009, retro_fcat_310,
Myotis lucifugus ENSMLUG00000015101 possible_ortholog 1 retrogene
retro_mluc_16,
Mustela putorius furo ENSMPUG00000001407 possible_ortholog 1 retrogene
retro_mputfur_98,
Mus musculus ENSMUSG00000000355 possible_ortholog 3 retrogenes
retro_mmus_2504, retro_mmus_2505, retro_mmus_69,
Oryctolagus cuniculus ENSOCUG00000014315 possible_ortholog 1 retrogene
retro_ocun_212,
Ictidomys tridecemlineatus ENSSTOG00000011496 possible_ortholog 2 retrogenes
retro_itri_1136, retro_itri_1468,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1786 94.48 100.00
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2. retro_pabe_1833 96.04 55.80
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Download FASTA sequences of all ENSPPYG00000020687 retrocopies