Parental gene:

MCTS1, ENSCAFG00000018545

Aliases:None
Description:malignant T cell amplified sequence 1 [Source:HGNC Symbol;Acc:23357]
Organism:Dog (Canis familiaris)
Coordinates:X:92559709..92570244(+)


>ENSCAFG00000018545
ATGTTCAAGAAATTTGATGAAAAAGAAAATGTGTCCAACTGCATCCAGTTGAAAACCTCAGTTATAAAAGGTATTAAGAA
CCAATTGATAGAACAATTTCCAGGTATTGAACCATGGCTTAATCAAATCATGCCTAAGAAAGATCCTGTCAAAATAGTGC
GATGCCATGAACATATAGAAATCCTTACAGTAAATGGAGAATTACTATTTTTTAGACAAAGAGAAGGGCCTTTTTATCCA
ACCCTAAGGTTACTTCACAAATATCCTTTTATCCTGCCACACCAGCAAGTTGATAAAGGAGCCATCAAATTTGTACTCAG
TGGAGCAAATATCATGTGTCCAGGCTTAACTTCTCCTGGAGCTAAACTTTACCCTGCTGCAGTAGATACAATTGTTGCAA
TTATGGCAGAAGGAAAACAGCATGCTCTGTGTGTTGGAGTCATGAAGATGTCTGCAGAAGATATTGAGAAAGTCAACAAA
GGAATTGGCATTGAAAATATCCATTATTTAAATGATGGGCTGTGGCATATGAAGACATATAAATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 5 .92 RPM
SRP017611_brain 5 .16 RPM
SRP017611_kidney 27 .67 RPM
SRP017611_liver 8 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000034992 ortholog_one2one 1 retrogene
retro_btau_116,
Cavia porcellus ENSCPOG00000005502 ortholog_one2one 1 retrogene
retro_cpor_1411,
Echinops telfairi ENSETEG00000015462 possible_ortholog 1 retrogene
retro_etel_19,
Felis catus ENSFCAG00000008448 possible_ortholog 2 retrogenes
retro_fcat_1009, retro_fcat_310,
Macropus eugenii ENSMEUG00000014328 possible_ortholog 1 retrogene
retro_meug_1518,
Macaca mulatta ENSMMUG00000009043 ortholog_one2one 1 retrogene
retro_mmul_626,
Monodelphis domestica ENSMODG00000010354 ortholog_one2one 1 retrogene
retro_mdom_203,
Mustela putorius furo ENSMPUG00000001407 ortholog_one2one 1 retrogene
retro_mputfur_98,
Mus musculus ENSMUSG00000000355 ortholog_one2one 3 retrogenes
retro_mmus_2504, retro_mmus_2505, retro_mmus_69,
Nomascus leucogenys ENSNLEG00000015021 ortholog_one2one 1 retrogene
retro_nleu_2442,
Oryctolagus cuniculus ENSOCUG00000014315 possible_ortholog 1 retrogene
retro_ocun_212,
Pongo abelii ENSPPYG00000020687 possible_ortholog 2 retrogenes
retro_pabe_1786, retro_pabe_1833,
Ictidomys tridecemlineatus ENSSTOG00000011496 ortholog_one2one 2 retrogenes
retro_itri_1136, retro_itri_1468,
Vicugna pacos ENSVPAG00000001801 ortholog_one2one 1 retrogene
retro_vpac_138,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_94 97.79 100.00
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Download FASTA sequences of all ENSCAFG00000018545 retrocopies