RetrogeneDB - Parental gene ENSMUSG00000090137 details

                            
>ENSMUSG00000090137
ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAA

GGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCC

GCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTGCGCGGTGGCATCATTGAGCCA

TCCCTTCGTCAGCTTGCCCAGAAGTACAACTGTGACAAGATGATCTGCCGCAAGTGCTACGCACGCCTGCACCCTCGTGC

AGTCAACTGCCGCAAGAAGAAGTGCGGCCATACCAACAACCTGCGCCCCAAGAAGAAGGTCAAATAA

Library	Parental gene expression (RPM)
SRP007412_brain	2 .48 RPM
SRP007412_cerebellum	2 .17 RPM
SRP007412_heart	4 .39 RPM
SRP007412_kidney	2 .18 RPM
SRP007412_liver	2 .92 RPM
SRP007412_testis	5 .12 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011356	possible_ortholog	10 retrogenes	retro_amel_1045, retro_amel_1416, retro_amel_1455, retro_amel_1759, retro_amel_1849, retro_amel_214, retro_amel_800, retro_amel_904, retro_amel_941, retro_amel_973,
Bos taurus	ENSBTAG00000007737	possible_ortholog	3 retrogenes	retro_btau_1059, retro_btau_1318, retro_btau_832,
Canis familiaris	ENSCAFG00000014723	possible_ortholog	8 retrogenes	retro_cfam_1671, retro_cfam_1725, retro_cfam_1879, retro_cfam_1933, retro_cfam_2205, retro_cfam_600, retro_cfam_654, retro_cfam_873,
Callithrix jacchus	ENSCJAG00000007470	possible_ortholog	22 retrogenes	retro_cjac_1363, retro_cjac_1388, retro_cjac_1426, retro_cjac_1485, retro_cjac_1521, retro_cjac_1561, retro_cjac_1731, retro_cjac_1743, retro_cjac_2002, retro_cjac_207, retro_cjac_2254, retro_cjac_2292, retro_cjac_2413, retro_cjac_2501, retro_cjac_2505, retro_cjac_2898, retro_cjac_3054, retro_cjac_658, retro_cjac_683, retro_cjac_883, retro_cjac_892, retro_cjac_898,
Cavia porcellus	ENSCPOG00000000351	ortholog_one2one	3 retrogenes	retro_cpor_1454, retro_cpor_1471, retro_cpor_1502,
Equus caballus	ENSECAG00000020660	possible_ortholog	8 retrogenes	retro_ecab_1014, retro_ecab_107, retro_ecab_313, retro_ecab_641, retro_ecab_772, retro_ecab_835, retro_ecab_836, retro_ecab_857,
Echinops telfairi	ENSETEG00000003392	ortholog_one2one	35 retrogenes	retro_etel_1121, retro_etel_113, retro_etel_1165, retro_etel_1229, retro_etel_1520, retro_etel_1521, retro_etel_1598, retro_etel_1618, retro_etel_1623, retro_etel_1644, retro_etel_1657, retro_etel_1707, retro_etel_1709, retro_etel_174, retro_etel_1756, retro_etel_1760, retro_etel_1785, retro_etel_1854, retro_etel_196, retro_etel_2027, retro_etel_2101, retro_etel_2123, retro_etel_2158, retro_etel_2166, retro_etel_268, retro_etel_376, retro_etel_386, retro_etel_406, retro_etel_660, retro_etel_690, retro_etel_70, retro_etel_755, retro_etel_807, retro_etel_843, retro_etel_859,
Felis catus	ENSFCAG00000009745	possible_ortholog	14 retrogenes	retro_fcat_1159, retro_fcat_1204, retro_fcat_1226, retro_fcat_1232, retro_fcat_1382, retro_fcat_1428, retro_fcat_1449, retro_fcat_1540, retro_fcat_1661, retro_fcat_86, retro_fcat_876, retro_fcat_909, retro_fcat_939, retro_fcat_989,
Homo sapiens	ENSG00000221983	possible_ortholog	2 retrogenes	retro_hsap_2622, retro_hsap_4004,
Gorilla gorilla	ENSGGOG00000004630	ortholog_one2one	8 retrogenes	retro_ggor_1021, retro_ggor_1045, retro_ggor_1265, retro_ggor_1835, retro_ggor_2579, retro_ggor_2687, retro_ggor_2782, retro_ggor_905,
Latimeria chalumnae	ENSLACG00000008132	ortholog_many2many	1 retrogene	retro_lcha_11,
Macropus eugenii	ENSMEUG00000013159	ortholog_one2one	5 retrogenes	retro_meug_1812, retro_meug_1868, retro_meug_441, retro_meug_513, retro_meug_750,
Microcebus murinus	ENSMICG00000017583	possible_ortholog	5 retrogenes	retro_mmur_143, retro_mmur_1486, retro_mmur_150, retro_mmur_633, retro_mmur_708,
Myotis lucifugus	ENSMLUG00000029594	ortholog_one2one	5 retrogenes	retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta	ENSMMUG00000016085	ortholog_one2one	7 retrogenes	retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Monodelphis domestica	ENSMODG00000003499	possible_ortholog	1 retrogene	retro_mdom_867,
Mustela putorius furo	ENSMPUG00000015527	possible_ortholog	8 retrogenes	retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Otolemur garnettii	ENSOGAG00000028000	possible_ortholog	10 retrogenes	retro_ogar_1345, retro_ogar_1419, retro_ogar_1583, retro_ogar_1604, retro_ogar_1792, retro_ogar_2026, retro_ogar_2370, retro_ogar_2485, retro_ogar_2544, retro_ogar_3337,
Ochotona princeps	ENSOPRG00000004784	possible_ortholog	6 retrogenes	retro_opri_1016, retro_opri_144, retro_opri_219, retro_opri_458, retro_opri_644, retro_opri_787,
Pongo abelii	ENSPPYG00000009746	possible_ortholog	2 retrogenes	retro_pabe_111, retro_pabe_3291,
Pan troglodytes	ENSPTRG00000039223	possible_ortholog	8 retrogenes	retro_ptro_1142, retro_ptro_1767, retro_ptro_2607, retro_ptro_2718, retro_ptro_2815, retro_ptro_792, retro_ptro_895, retro_ptro_919,
Pteropus vampyrus	ENSPVAG00000024217	ortholog_one2one	19 retrogenes	retro_pvam_1029, retro_pvam_1102, retro_pvam_1146, retro_pvam_1164, retro_pvam_1320, retro_pvam_1325, retro_pvam_1361, retro_pvam_1434, retro_pvam_1447, retro_pvam_211, retro_pvam_327, retro_pvam_517, retro_pvam_528, retro_pvam_600, retro_pvam_632, retro_pvam_655, retro_pvam_749, retro_pvam_987, retro_pvam_994,
Rattus norvegicus	ENSRNOG00000019974	possible_ortholog	7 retrogenes	retro_rnor_1125, retro_rnor_1458, retro_rnor_2115, retro_rnor_2472, retro_rnor_2487, retro_rnor_2901, retro_rnor_944,
Sorex araneus	ENSSARG00000000984	possible_ortholog	11 retrogenes	retro_sara_145, retro_sara_164, retro_sara_192, retro_sara_256, retro_sara_281, retro_sara_331, retro_sara_344, retro_sara_599, retro_sara_67, retro_sara_687, retro_sara_94,
Sarcophilus harrisii	ENSSHAG00000007075	possible_ortholog	3 retrogenes	retro_shar_405, retro_shar_434, retro_shar_703,
Sus scrofa	ENSSSCG00000013907	possible_ortholog	1 retrogene	retro_sscr_988,
Ictidomys tridecemlineatus	ENSSTOG00000004678	possible_ortholog	1 retrogene	retro_itri_49,
Tursiops truncatus	ENSTTRG00000021461	possible_ortholog	1 retrogene	retro_ttru_1582,
Xiphophorus maculatus	ENSXMAG00000003911	ortholog_one2many	1 retrogene	retro_xmac_6,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_mmus_31	98.44	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_mmus_101	96.00	97.66	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_mmus_129	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSMUSG00000090137 retrocopies

Parental gene:	Uba52, ENSMUSG00000090137
Aliases:	Uba52, D8Ertd21e, Gm1863, Rps27a, Ubb, Ubc
Description:	ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:MGI Symbol;Acc:MGI:98887]
Organism:	*Mouse (Mus musculus)*
Coordinates:	8:70508262..70510801(-)

Parental gene:

Uba52, ENSMUSG00000090137