Parental gene:

Gapdh, ENSMUSG00000057666

Aliases:Gapdh, Gapd
Description:glyceraldehyde-3-phosphate dehydrogenase [Source:MGI Symbol;Acc:MGI:95640]
Organism:Mouse (Mus musculus)
Coordinates:6:125161714..125166467(-)


>ENSMUSG00000057666
ATGGTGAAGGTCGGTGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCATTTGCAGTGGCAAAGTGGA
GATTGTTGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCCACTCACGGCAAAT
TCAACGGCACAGTCAAGGCCGAGAATGGGAAGCTTGTCATCAACGGGAAGCCCATCACCATCTTCCAGGAGCGAGACCCC
ACTAACATCAAATGGGGTGAGGCCGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCGG
GGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGA
ACCACGAGAAATATGACAACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAACTGCTTAGCCCCCCTGGCCAAG
GTCATCCATGACAACTTTGGCATTGTGGAAGGGCTCATGACCACAGTCCATGCCATCACTGCCACCCAGAAGACTGTGGA
TGGCCCCTCTGGAAAGCTGTGGCGTGATGGCCGTGGGGCTGCCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGG
CTGTGGGCAAGGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTTCCTACCCCCAATGTGTCCGTC
GTGGATCTGACGTGCCGCCTGGAGAAACCTGCCAAGTATGATGACATCAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCC
ACTGAAGGGCATCTTGGGCTACACTGAGGACCAGGTTGTCTCCTGCGACTTCAACAGCAACTCCCACTCTTCCACCTTCG
ATGCCGGGGCTGGCATTGCTCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATACGGCTACAGCAAC
AGGGTGGTGGACCTCATGGCCTACATGGCCTCCAAGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain 278 .65 RPM
SRP007412_cerebellum 213 .55 RPM
SRP007412_heart 706 .53 RPM
SRP007412_kidney 440 .24 RPM
SRP007412_liver 224 .28 RPM
SRP007412_testis 22 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 possible_ortholog 5 retrogenes
Ailuropoda melanoleuca ENSAMEG00000014329 possible_ortholog 35 retrogenes
Bos taurus ENSBTAG00000014731 possible_ortholog 4 retrogenes
Canis familiaris ENSCAFG00000015077 possible_ortholog 4 retrogenes
Callithrix jacchus ENSCJAG00000008234 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000022051 possible_ortholog 11 retrogenes
Erinaceus europaeus ENSEEUG00000011444 ortholog_one2many 3 retrogenes
Echinops telfairi ENSETEG00000013749 possible_ortholog 118 retrogenes
retro_etel_1011, retro_etel_1037, retro_etel_1070, retro_etel_1117, retro_etel_1132, retro_etel_1153, retro_etel_1171, retro_etel_1183, retro_etel_1214, retro_etel_1215, retro_etel_1247, retro_etel_1249, retro_etel_1255, retro_etel_1257, retro_etel_1258, retro_etel_1266, retro_etel_127, retro_etel_1320, retro_etel_1349, retro_etel_1352, retro_etel_1381, retro_etel_1386, retro_etel_1389, retro_etel_1408, retro_etel_1419, retro_etel_1422, retro_etel_1431, retro_etel_1437, retro_etel_1470, retro_etel_1473, retro_etel_1490, retro_etel_150, retro_etel_1511, retro_etel_1538, retro_etel_1550, retro_etel_1563, retro_etel_1570, retro_etel_1588, retro_etel_1601, retro_etel_1608, retro_etel_1620, retro_etel_163, retro_etel_1635, retro_etel_1641, retro_etel_1674, retro_etel_1679, retro_etel_1702, retro_etel_1738, retro_etel_1746, retro_etel_1759, retro_etel_1769, retro_etel_1776, retro_etel_1780, retro_etel_180, retro_etel_184, retro_etel_1840, retro_etel_1869, retro_etel_1895, retro_etel_1897, retro_etel_1949, retro_etel_1970, retro_etel_1976, retro_etel_1982, retro_etel_1989, retro_etel_2033, retro_etel_2076, retro_etel_209, retro_etel_212, retro_etel_213, retro_etel_2152, retro_etel_2161, retro_etel_2173, retro_etel_2198, retro_etel_2202, retro_etel_2210, retro_etel_243, retro_etel_290, retro_etel_330, retro_etel_339, retro_etel_340, retro_etel_365, retro_etel_397, retro_etel_432, retro_etel_440, retro_etel_463, retro_etel_489, retro_etel_495, retro_etel_504, retro_etel_536, retro_etel_557, retro_etel_586, retro_etel_589, retro_etel_600, retro_etel_611, retro_etel_618, retro_etel_621, retro_etel_624, retro_etel_649, retro_etel_653, retro_etel_69, retro_etel_770, retro_etel_780, retro_etel_790, retro_etel_792, retro_etel_798, retro_etel_802, retro_etel_810, retro_etel_874, retro_etel_895, retro_etel_899, retro_etel_90, retro_etel_906, retro_etel_931, retro_etel_934, retro_etel_935, retro_etel_968, retro_etel_969, retro_etel_987,
Felis catus ENSFCAG00000006874 possible_ortholog 17 retrogenes
Homo sapiens ENSG00000111640 possible_ortholog 42 retrogenes
Gorilla gorilla ENSGGOG00000009553 possible_ortholog 30 retrogenes
Loxodonta africana ENSLAFG00000002780 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015273 ortholog_one2many 67 retrogenes
Microcebus murinus ENSMICG00000006546 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000014320 possible_ortholog 18 retrogenes
Macaca mulatta ENSMMUG00000018679 possible_ortholog 33 retrogenes
Monodelphis domestica ENSMODG00000018066 ortholog_many2many 41 retrogenes
Mustela putorius furo ENSMPUG00000016891 possible_ortholog 28 retrogenes
Mus musculus ENSMUSG00000061099 within_species_paralog 2 retrogenes
Nomascus leucogenys ENSNLEG00000003825 possible_ortholog 44 retrogenes
Ornithorhynchus anatinus ENSOANG00000004492 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000012514 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000006928 possible_ortholog 9 retrogenes
Pongo abelii ENSPPYG00000004189 possible_ortholog 38 retrogenes
Pan troglodytes ENSPTRG00000004577 possible_ortholog 43 retrogenes
Pteropus vampyrus ENSPVAG00000012570 possible_ortholog 14 retrogenes
Rattus norvegicus ENSRNOG00000018630 ortholog_many2many 4 retrogenes
Rattus norvegicus ENSRNOG00000030638 ortholog_many2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000014953 ortholog_many2many 4 retrogenes
Sus scrofa ENSSSCG00000000694 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000007538 possible_ortholog 9 retrogenes
Tursiops truncatus ENSTTRG00000016094 possible_ortholog 2 retrogenes
Xenopus tropicalis ENSXETG00000033975 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_48 99.40 92.76
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2. retro_mmus_136 94.36 92.76
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3. retro_mmus_211 95.24 92.76
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4. retro_mmus_300 80.65 94.15
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5. retro_mmus_416 98.23 94.43
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6. retro_mmus_437 72.62 69.36
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7. retro_mmus_553 88.56 94.43
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8. retro_mmus_608 86.42 94.43
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9. retro_mmus_619 89.44 94.43
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10. retro_mmus_628 82.22 94.43
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11. retro_mmus_635 98.53 94.43
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12. retro_mmus_698 99.71 94.43
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13. retro_mmus_745 92.08 94.43
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14. retro_mmus_765 91.81 94.15
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15. retro_mmus_766 100.00 94.43
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16. retro_mmus_787 92.38 94.43
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17. retro_mmus_811 94.69 94.43
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18. retro_mmus_893 79.55 73.82
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19. retro_mmus_914 92.08 94.43
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20. retro_mmus_921 91.36 67.13
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21. retro_mmus_946 93.43 95.82
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22. retro_mmus_952 94.24 95.82
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23. retro_mmus_976 87.27 75.77
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24. retro_mmus_996 92.53 77.72
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25. retro_mmus_1029 83.48 91.92
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26. retro_mmus_1082 84.31 56.27
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27. retro_mmus_1136 97.06 94.43
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28. retro_mmus_1193 79.30 94.43
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29. retro_mmus_1249 76.82 83.01
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30. retro_mmus_1319 98.23 94.43
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31. retro_mmus_1328 99.71 94.43
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32. retro_mmus_1365 92.94 89.97
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33. retro_mmus_1371 93.84 94.43
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34. retro_mmus_1467 86.22 61.56
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35. retro_mmus_1474 88.12 94.43
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36. retro_mmus_1480 79.18 93.87
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37. retro_mmus_1615 83.46 70.19
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38. retro_mmus_1692 84.46 53.20
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39. retro_mmus_1721 80.23 95.82
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40. retro_mmus_1728 88.34 94.43
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41. retro_mmus_1886 81.73 53.76
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42. retro_mmus_1922 81.86 65.46
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43. retro_mmus_1957 96.46 94.43
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44. retro_mmus_1983 83.64 58.50
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45. retro_mmus_1985 90.62 94.43
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46. retro_mmus_2009 99.41 94.43
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47. retro_mmus_2020 100.00 94.43
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48. retro_mmus_2030 99.34 84.40
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49. retro_mmus_2100 92.56 92.48
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50. retro_mmus_2119 87.10 94.43
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51. retro_mmus_2122 90.06 94.43
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52. retro_mmus_2148 81.82 89.97
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53. retro_mmus_2158 99.12 94.43
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54. retro_mmus_2175 97.35 94.43
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55. retro_mmus_2206 100.00 94.43
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56. retro_mmus_2216 77.51 56.55
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57. retro_mmus_2248 77.49 93.59
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58. retro_mmus_2298 99.41 94.43
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59. retro_mmus_2370 92.11 94.43
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60. retro_mmus_2371 93.26 94.43
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61. retro_mmus_2389 85.09 94.43
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62. retro_mmus_2463 100.00 94.43
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63. retro_mmus_2477 94.04 60.17
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64. retro_mmus_2481 100.00 94.43
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65. retro_mmus_2512 83.76 95.82
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66. retro_mmus_2556 97.35 94.43
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67. retro_mmus_2587 99.71 94.43
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68. retro_mmus_2623 80.00 94.15
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69. retro_mmus_2626 99.41 94.43
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70. retro_mmus_2647 86.12 57.66
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71. retro_mmus_2681 100.00 94.43
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72. retro_mmus_2755 92.20 95.82
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73. retro_mmus_2761 97.35 94.43
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74. retro_mmus_2764 80.58 55.71
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75. retro_mmus_2848 100.00 94.43
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76. retro_mmus_2872 99.22 71.03
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77. retro_mmus_2911 79.58 92.20
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78. retro_mmus_2912 85.63 94.15
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79. retro_mmus_2913 79.88 92.20
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80. retro_mmus_2914 85.34 94.15
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81. retro_mmus_2915 87.39 94.15
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82. retro_mmus_2920 84.68 61.28
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83. retro_mmus_2932 100.00 94.43
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84. retro_mmus_2943 69.08 95.82
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85. retro_mmus_3036 77.84 94.15
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86. retro_mmus_3064 98.53 94.43
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87. retro_mmus_3120 84.38 52.37
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88. retro_mmus_3137 99.41 94.43
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89. retro_mmus_3140 76.23 66.85
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90. retro_mmus_3148 83.48 93.87
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91. retro_mmus_3151 87.71 80.78
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92. retro_mmus_3188 90.13 64.07
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93. retro_mmus_3193 92.96 94.43
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94. retro_mmus_3197 92.38 94.43
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95. retro_mmus_3216 99.41 94.43
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96. retro_mmus_3228 100.00 94.43
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97. retro_mmus_3306 89.74 94.43
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98. retro_mmus_3335 80.41 94.43
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99. retro_mmus_3336 93.55 94.43
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100. retro_mmus_3357 93.57 94.43
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101. retro_mmus_3377 90.96 94.43
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102. retro_mmus_3445 80.65 93.87
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103. retro_mmus_3514 94.13 94.43
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104. retro_mmus_3575 87.76 94.43
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105. retro_mmus_3650 99.71 94.43
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106. retro_mmus_3658 92.11 94.43
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107. retro_mmus_3693 90.06 94.43
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108. retro_mmus_3716 85.60 70.75
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109. retro_mmus_3814 100.00 94.43
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Download FASTA sequences of all ENSMUSG00000057666 retrocopies