Parental gene:

PFN1, ENSMMUG00000002772

Aliases:PFN1, profilin-1
Description:Profilin [Source:UniProtKB/TrEMBL;Acc:F7H2A5]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:16:4746747..4750041(-)


>ENSMMUG00000002772
ATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGTTACAAGGA
CTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACCTTCGTCAACATCACGCCAGCTGAGGTGGGTGTCCTGGTTGGCA
AAGACCGGTCAAGTTTTTACGTCAATGGGCTGACACTTGGGGGCCAGAAATGTTCGGTGATCCGGGACTCACTGCTGCAG
GATGGGGAGTTTAGCATGGATCTTCGTACCAAGAGCACCGGTGGGGCCCCCACCTTCAATGTCACTGTCACCAAGACTGA
CAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCC
ACCTTCGGCGCTCCCAGTACTGA

Library Parental gene expression (RPM)
SRP007412_brain 35 .07 RPM
SRP007412_brain_prefrontal_cortex 67 .43 RPM
SRP007412_cerebellum 29 .12 RPM
SRP007412_heart 90 .62 RPM
SRP007412_kidney 116 .31 RPM
SRP007412_liver 304 .16 RPM
SRP007412_testis 35 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006193 possible_ortholog 2 retrogenes
retro_amel_1712, retro_amel_1781,
Bos taurus ENSBTAG00000004915 ortholog_one2many 1 retrogene
retro_btau_141,
Callithrix jacchus ENSCJAG00000011719 ortholog_one2one 2 retrogenes
retro_cjac_1023, retro_cjac_1641,
Cavia porcellus ENSCPOG00000013136 ortholog_one2one 1 retrogene
retro_cpor_1216,
Equus caballus ENSECAG00000021116 ortholog_one2many 3 retrogenes
retro_ecab_171, retro_ecab_28, retro_ecab_559,
Homo sapiens ENSG00000108518 ortholog_one2one 10 retrogenes
retro_hsap_214, retro_hsap_215, retro_hsap_221, retro_hsap_223, retro_hsap_224, retro_hsap_352, retro_hsap_446, retro_hsap_447, retro_hsap_450, retro_hsap_451,
Gorilla gorilla ENSGGOG00000022394 ortholog_one2one 3 retrogenes
retro_ggor_285, retro_ggor_289, retro_ggor_366,
Mus musculus ENSMUSG00000018293 ortholog_one2one 1 retrogene
retro_mmus_1326,
Nomascus leucogenys ENSNLEG00000017446 ortholog_one2many 6 retrogenes
retro_nleu_16, retro_nleu_1870, retro_nleu_2425, retro_nleu_2429, retro_nleu_848, retro_nleu_886,
Otolemur garnettii ENSOGAG00000031395 ortholog_one2one 3 retrogenes
retro_ogar_1680, retro_ogar_2143, retro_ogar_3351,
Procavia capensis ENSPCAG00000000291 ortholog_one2one 1 retrogene
retro_pcap_27,
Pelodiscus sinensis ENSPSIG00000004124 ortholog_one2one 1 retrogene
retro_psin_8,
Pan troglodytes ENSPTRG00000008616 ortholog_one2one 5 retrogenes
retro_ptro_185, retro_ptro_196, retro_ptro_276, retro_ptro_332, retro_ptro_333,
Rattus norvegicus ENSRNOG00000003975 ortholog_one2many 1 retrogene
retro_rnor_1623,
Sus scrofa ENSSSCG00000017905 ortholog_one2one 1 retrogene
retro_sscr_275,
Ictidomys tridecemlineatus ENSSTOG00000028950 ortholog_one2one 1 retrogene
retro_itri_129,
Tursiops truncatus ENSTTRG00000001299 ortholog_one2many 1 retrogene
retro_ttru_14,
Vicugna pacos ENSVPAG00000005327 ortholog_one2one 3 retrogenes
retro_vpac_389, retro_vpac_395, retro_vpac_457,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_407 75.35 100.00
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2. retro_mmul_527 73.72 97.14
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3. retro_mmul_528 71.53 97.14
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4. retro_mmul_574 69.23 100.00
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5. retro_mmul_732 68.84 97.14
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Download FASTA sequences of all ENSMMUG00000002772 retrocopies